Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04321 ATGTCCAATTTCAACAAGGGTGATCCCGTGGAGGTGACCAAGGCCAACGACAGCAGCGATTGCCATTGCTACTACTACCCTGCCACCGTTGTACGGCCACCCTCCAAAAGCAAAAACCTGGTGTTCGTGGAGTATCTCACCCTCTTCGCCCCTTCCTCACACTCACAATCACAATCGCAAACCCCCAAACGCCTCAGGGAGTACGTCAATGTCGCTAACGTCAGGCCCAAGGTTCCTCACCAGCTCAACCCTTGGTTCAAGGTCGGTGACTCCGTCGACGCCTTCCGCCATCCTCTCAATGCTTGGTGCCCAGCCACCGTCACTGACATTCTCGAAAACTCCACTTACCTCGTCCACTTTCACGGCTCTCACCATCACTCTGCCCCCGTCGATCACTGCAACCTGCGCCTTCACCGGGATTGGCTCCATGGAGATTGGGCCCCACCTCTCCCCCAACTCCAACAGGAGAAGCCCCCTCAGATATTGCCAAAGCCTGATACTCTTAGGTTTAAGATTAAATATAGCAGGAAGCCACTAAAGGGATCAAAGTTTAGAAAAGGGGGAATAGTGGAAGTCAGCAACGATGATGAAGGTTATAAGGGTGCTTGGTTTATTGCTACTATTGTCGACATAATAGGAAAAGACAGGTTTCTAATAGAATATAGGGACCTGACTACAGATGATGGCACCCAGCTCTTGAAAGAAGAAACCAATGCAGTGTTTATTAGGCCATGTCCCCCTGAAGTTCCAATTGTGGGTTCTTTCAAACAGTTTCAAGAAGTTGATGCATGGTACAATGATGGATGGTGGGAAGGTGTGGTTCTTGAAGTACTGAATAGAAGAGAGTGTTTGGTTTCTTTTATGCACAGGGATGTATTGAAATTTGAAAATTCTAAACTAAGGCCTCATCAGGACTGGATCGATGGGAAATGGGTCATGTCTTCCAAGACATCAAGTGAGCTGGTGGAGAAGTTTGGAGATGTGATGCCTAAAGCCAAGAGTCTCATTGGAAATAAATTAATCTTGAAATATCGAAAGCCTAGTGAGCAAGCAAAGAAGCCTAGAGATGTAATGGCGAGGACCACAAACACCAAAGACAAATTTGTGTTGCATTTCTGTAAAGGTGCAGACATAGAAGTCAGAAGCGATGAAGAAGGCTACCAAGGTTCCTGGTATGCTGCCATTGTTGTTGATTATTTGCAGAATGGAAAGTACTTGGTGGAGTATTTGACCCTGAAAACAGATGACTTAACTGAGCAACTGAAAGAAGAAGCAGATGCTTCAGATATCAGGCCATATCCACCAGATATCAGTCAAGATTATCGCTTTGCACTGCATGAATGGGTTGATGCTTGGTATAATGATGGATGGTGGGTAGGTCAGGTATCTAGTGTTCTTCGTAATTTCAAGTATATGGTTTACTTTTGGCCTACAAAGGAGGAGCTGGAATTTGAGCATTATAATCTGAGGCCTCATCAAGAATGGATTGATGGAAGATGGGTGGGTGCTTCTTAG 1515 0.4587 MSNFNKGDPVEVTKANDSSDCHCYYYPATVVRPPSKSKNLVFVEYLTLFAPSSHSQSQSQTPKRLREYVNVANVRPKVPHQLNPWFKVGDSVDAFRHPLNAWCPATVTDILENSTYLVHFHGSHHHSAPVDHCNLRLHRDWLHGDWAPPLPQLQQEKPPQILPKPDTLRFKIKYSRKPLKGSKFRKGGIVEVSNDDEGYKGAWFIATIVDIIGKDRFLIEYRDLTTDDGTQLLKEETNAVFIRPCPPEVPIVGSFKQFQEVDAWYNDGWWEGVVLEVLNRRECLVSFMHRDVLKFENSKLRPHQDWIDGKWVMSSKTSSELVEKFGDVMPKAKSLIGNKLILKYRKPSEQAKKPRDVMARTTNTKDKFVLHFCKGADIEVRSDEEGYQGSWYAAIVVDYLQNGKYLVEYLTLKTDDLTEQLKEEADASDIRPYPPDISQDYRFALHEWVDAWYNDGWWVGQVSSVLRNFKYMVYFWPTKEELEFEHYNLRPHQEWIDGRWVGAS. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04321 504 CDD Tudor_Agenet_AtDUF_rpt2_4 259 302 - -
Seca5g04321 504 CDD Tudor_Agenet_AtDUF_rpt1_3 184 247 - -
Seca5g04321 504 Gene3D - 66 139 - -
Seca5g04321 504 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 2 150 - -
Seca5g04321 504 CDD Tudor_Agenet_AtDUF_rpt2_4 449 491 - -
Seca5g04321 504 Gene3D - 360 441 - -
Seca5g04321 504 Pfam Agenet domain 7 79 IPR008395 -
Seca5g04321 504 Pfam Agenet domain 375 435 IPR008395 -
Seca5g04321 504 Pfam Agenet domain 190 247 IPR008395 -
Seca5g04321 504 CDD Tudor_Agenet_AtDUF_rpt1_3 372 435 - -
Seca5g04321 504 SMART agenet_At_2 370 438 IPR014002 -
Seca5g04321 504 SMART agenet_At_2 253 308 IPR014002 -
Seca5g04321 504 SMART agenet_At_2 441 497 IPR014002 -
Seca5g04321 504 SMART agenet_At_2 84 143 IPR014002 -
Seca5g04321 504 SMART agenet_At_2 182 250 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04321 Seca-Chr5 100576290 100579518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04321 381 495 PHD Transcription Factor Family AT5G58610 29.496 1.26e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04321 - - adu:107483399 579.326