Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04296 ATGGAGGAGAAGAGAGAAGGGGCACACCCCACCAACTCATCATCCACACCCACCACCACCATGGCATTTTCCGACGAGATTCCGAGCATAAGCACCACTCACTTGACTTTCCCTTTCCAACCCACCTTCTTTGACATGATACCATCTTCCTCCTGTGACCAAAAGGCCTCATCTTTCGGCTTCATGGACTTACTGGGTGTCCATGATTACAACAACACTTCCTTTTTGGATTGGCCACCCACCGCCACCACCATCACCACACCCACCACCGTCCACCACCCTCTTCCGTCACCGGCGAGCTCCAATGTCCCGGACTCGTCTGAGGTGTTGAACACTCCGGCATCGCCTAATTCATGTTCAATTTCTTCATCATCGAATGAGGCCACCGCCCACAACGCTGCGAACGAACGACAGAGTGGTAAACATGAAGCAGAGGAAGAGGACGGAGCCAGAGGAGATGACCAAGATGAAGACAAGACTAAGAAACAGGAAATAAATAATAAAAATTGGAAATTTAACACAAAATTGATGATCTGCAGGTTGAAAGCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCTCGATTTGCATTCATGACAAAGAGCGAAGTGGATCACCTAGACGATGGGTATAGATGGCGCAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGTTACTACCGTTGCACCACGGCTGGTTGCGGTGTGAAGAAGCGCGTGGAGCGTTCCTCCGATGACCCTTCCATTGTTGTAACAACCTACGAGGGACAACACACCCATCCATGCCCCGCCACGTCACGCTCTAGCCTCGGATTCATGCACGAACCTACTGGGTTCGGTGCCAATGCTTTCGGTTCGCAACACTTGCTGCAACCGTTTCAACAGAATCAAATTAACATGCCAATGCCACATGCTGCAACAACAACTACTATGTCATATAATAACTCCATTACCCCTCCTCTGAGCGGTTACTTGAATACGGCGTCGTTTGGTGGATTCGTTCAGGAGCATGGGAATCATGTTAGGGGTTTTGGATCGGTTCATGAGGCTATGTTAAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCGAAGCAAGTGAGGAAGCTGGGAGAGAAGAAAGAAAGAGATGAGTAG 1149 0.49 MEEKREGAHPTNSSSTPTTTMAFSDEIPSISTTHLTFPFQPTFFDMIPSSSCDQKASSFGFMDLLGVHDYNNTSFLDWPPTATTITTPTTVHHPLPSPASSNVPDSSEVLNTPASPNSCSISSSSNEATAHNAANERQSGKHEAEEEDGARGDDQDEDKTKKQEINNKNWKFNTKLMICRLKAKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPATSRSSLGFMHEPTGFGANAFGSQHLLQPFQQNQINMPMPHAATTTTMSYNNSITPPLSGYLNTASFGGFVQEHGNHVRGFGSVHEAMLRDNGLLQDIIVPKQVRKLGEKKERDE. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04296 382 MobiDBLite consensus disorder prediction 87 135 - -
Seca5g04296 382 MobiDBLite consensus disorder prediction 87 167 - -
Seca5g04296 382 Coils Coil 376 382 - -
Seca5g04296 382 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 300 IPR044810 GO:0003700
Seca5g04296 382 MobiDBLite consensus disorder prediction 136 167 - -
Seca5g04296 382 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g04296 382 SUPERFAMILY WRKY DNA-binding domain 199 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g04296 382 FunFam WRKY transcription factor 57 193 267 - -
Seca5g04296 382 SMART WRKY_cls 207 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g04296 382 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g04296 382 ProSiteProfiles WRKY domain profile. 202 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g04296 382 Gene3D WRKY domain 181 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04296 Seca-Chr5 100435140 100437462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04296 180 366 WRKY Transcription Factor Family AT2G47260 49.746 5.80e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g04296 WRKY 2.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04296 - - mtr:11408791 397.512