Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04293 ATGGCATCATCGACTCTGATCTCAAACCCAGCTACCACACGTGACCCTCACAGGACAAAGAAGAAGAAGAAAGCACAGTTGAAGAATCAGCAACAACAAGAGCAAGAACAGAGCCACGCCAAATGGAGATCACAGTCACAGCAACAAATCTACTCTTCAAAGCTTCGTCAAGCCTTAGCCAGAGTCAACCTCGACGGAAACGGCACCGGAGACGCACCTCGCCGGGGGAAGGCCGTCCGGGAAGCCGCAGACAGGGTACTCGCCGTGGCAGCAAGGGGAAGGACACGGTGGAGCAGAGCTATACTGACCAATAGGCTGAAACTCAAGTTCAGAAAACAGAGCAAGAGACAACAGAGAGTTGTTGGACCGGTCAGGTCCAAGAAGCCCCGGTTCAGCGTTGTCCGGCTCAAGGGAAAGACCCTTCCGGCGGTTCAGAGGAAAGTTAAGTTCCTCGGCCGGTTGGTTCCCGGTTGCCGGAAAGAACCGTTACCGGTTATTCTAGAAGAAGCCATTGATTACATTCCAGCACTTGAGATGCAGGTTCGAGCCATGACAGCTCTCGCTGATTTACTCCTTGGCTCTTCTTCTTCCTCTTCTTCTTCCGCCGCCGCCAACGGCGGCGGCTCCAGTTTCGCGCCGCCGAGTTGA 648 0.5432 MASSTLISNPATTRDPHRTKKKKKAQLKNQQQQEQEQSHAKWRSQSQQQIYSSKLRQALARVNLDGNGTGDAPRRGKAVREAADRVLAVAARGRTRWSRAILTNRLKLKFRKQSKRQQRVVGPVRSKKPRFSVVRLKGKTLPAVQRKVKFLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMTALADLLLGSSSSSSSSAAANGGGSSFAPPS. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04293 215 CDD bHLH_AtIBH1_like 133 186 IPR044549 GO:0006355
Seca5g04293 215 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 195 IPR044660 GO:0006355
Seca5g04293 215 MobiDBLite consensus disorder prediction 1 49 - -
Seca5g04293 215 Coils Coil 17 37 - -
Seca5g04293 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 193 IPR036638 GO:0046983
Seca5g04293 215 MobiDBLite consensus disorder prediction 195 215 - -
Seca5g04293 215 MobiDBLite consensus disorder prediction 30 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04293 Seca-Chr5 100378327 100378974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04293 41 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 57.500 4.59e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04293 - - gmx:100792237 249.21