Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04290 ATGCTTCATGCATTGATGAATCTTCTCTCTCCCTGTTGGAAGCCTTTCGGGCACGGTGATGAGTCTTCAGCTGGCATTGTCGGAAGAGAAGGCAAAGACGGCTTGCTCTGGTTCAGAGATATCGGAAAGTATGGCTCCGGCGAGTTCTCGATGGCGGTGGTTCAGGCCAATCAGGTCCTCGAAGACCAGAGCCAGATCGAGTCCGGTCCTCTCGGCACCTTCGTCGGCGTTTACGATGGCCACGGTGGACCCGACGCGTCGCGATACGTGTGCGATCACTTGTTCCGCAATTTCCAAGGCTGTCTTAGACTTAATGTAGGTGCAGCAGTATCGGGTGAGTCACGGGGTGTTGTGACAGCTGAGACCATTCAAACAGCTTTCCGCAGAACAGAAGAGGGTTTCACTGCTCTTGTTTCAGAATTATGGAATACGCGGCCTCAAGTTGCAACTACTGGAACGTGTTGTCTAGTTGGTGTGATTTTTCAACAGACTCTCTTTGTGGCAAATGTTGGAGATTCCCGTGTTGTGTTGGGCAAGAAAGTTGGCAACACTGGTGGGATTGCTGCAATTCAGCTGTCTACGGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTCAAAGAATTACACCCTAATGATCCTCAAATTGTCGTCCTCAAACATGGTGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCCAGATCTATTGGTGACGTGTATATGAAACATGCACAGTTTAACCGGGAACCAATTAATCTAAAGTTCAGACTTCCTGAACCAATGGACATGCCTATCTTGTCCGCTAATCCATCTATTATTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATCAAAAAGCAGTTGATATTGTTCACAGCAATCCTCGTGCGGGTAGTGCAAAGAGACTTGTGAAGGCTGCCTTGCAAGAAGCGGCAAGAAAACGTGAAATGCGATATTCAGACCTTCGTAAGATTGATAAGAAGGTTCGACGCCATTTTCATGATGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCTAGAGGAACAGTTCTAAACCCGCCACTCTCAGTTCGAAGTGCTCTCGATCACTGA 1146 0.4625 MLHALMNLLSPCWKPFGHGDESSAGIVGREGKDGLLWFRDIGKYGSGEFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGGPDASRYVCDHLFRNFQGCLRLNVGAAVSGESRGVVTAETIQTAFRRTEEGFTALVSELWNTRPQVATTGTCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGIAAIQLSTEHNANLEAVRQELKELHPNDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINLKFRLPEPMDMPILSANPSIISHPLQPNDSFLIFASDGLWEHLSNQKAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGTVLNPPLSVRSALDH. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04290 381 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Seca5g04290 381 ProSiteProfiles PPM-type phosphatase domain profile. 45 358 IPR001932 -
Seca5g04290 381 PANTHER PROTEIN PHOSPHATASE 46 356 IPR015655 GO:0004722|GO:0006470
Seca5g04290 381 SMART PP2C_4 35 356 IPR001932 -
Seca5g04290 381 SUPERFAMILY PP2C-like 57 359 IPR036457 -
Seca5g04290 381 Pfam Protein phosphatase 2C 72 328 IPR001932 -
Seca5g04290 381 Gene3D - 39 366 IPR036457 -
Seca5g04290 381 CDD PP2Cc 49 358 IPR001932 -
Seca5g04290 381 FunFam Probable protein phosphatase 2C 42 39 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04290 Seca-Chr5 100333172 100340528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04290 1 378 PP2C-type Phosphatase Gene Family AT4G38520 58.140 3.84e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04290 K01102 - gmx:100790813 654.055