Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04287 ATGGCTTCAACATTCACAGTGGCAATCATCCTTTTTACCTTGTTTTGCATGTCATATTATGCTCTTGGCTATGATGCAAAAACGGTCATAGACTCTCCTTTGTTAACAGAAAAATTAGGAATTAATCGCACTATCAAAGTAGATATCAATGGAAATGGGGACTTCAAATCAGTCCAAGATGCCATAGATTCCATCCCTGATGGAAATTCTAATTGGGTGATTGTCCATGTTAGAAAAGGAGTATACAGGGAAAAGGTGCACATACCAAAGACTAAGCGTTACATATTCATGAGAGGGAATGGAAGAGGAAAAACTGCCATAGTTTGGTCTCAAAGCTCTTCTGACAACGAAGCCTCTGCTACCTTCAAAGCCGAAGCCACTGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGAGGCACCTACAGGGGTTGCTTATACCTCGCAGAATCAATCAGTGGCAGCATTTGTGGCAGCAGACAAAATAGCATTTTACCACTGTGCATTTTACAGCACTCATAACACTCTCTTTGATTATAAAGGCAGACATTACTATGAGTCCTGCTATATTCAAGGCTCTATTGATTTCATATTTGGCCGTGGCAGATCTATCTTTCATAGCTGTGAGATGTTTGTGATTGGTGACAAAAGAGTATCAATTCATGGGTCAGTGACGGCTCAAAACAGGGAAAGTGAACCTGAGATTAGTGGATTTATCTTTATCAAAGGCAAGGTTTACGGCATTGGTGGGGTGTACCTAGGAAGAGCTAAGGGTGCATTTTCTAGGGTGATTTTTGCTAAGACATACCTTTCAAAGACCATTGTCCCAGAAGGGTGGACCAATTGGAGCTATCACGGGAGCACAGAGAATCTATTCCATACGGAGTATAAATGTCATGGACCTGGAGCCACTAGAATGGGACGCGCTCCTTGGTCAAAGGAGCTTACTGACGAACAAGTTGCACCCTTTTTATCTATTGATTACATTGATGGCAAGAATTGGTTACCTGTATGGCAATGA 1020 0.4157 MASTFTVAIILFTLFCMSYYALGYDAKTVIDSPLLTEKLGINRTIKVDINGNGDFKSVQDAIDSIPDGNSNWVIVHVRKGVYREKVHIPKTKRYIFMRGNGRGKTAIVWSQSSSDNEASATFKAEATDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSIFHSCEMFVIGDKRVSIHGSVTAQNRESEPEISGFIFIKGKVYGIGGVYLGRAKGAFSRVIFAKTYLSKTIVPEGWTNWSYHGSTENLFHTEYKCHGPGATRMGRAPWSKELTDEQVAPFLSIDYIDGKNWLPVWQ. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04287 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 42 335 - -
Seca5g04287 339 Pfam Pectinesterase 46 331 IPR000070 GO:0030599|GO:0042545
Seca5g04287 339 SUPERFAMILY Pectin lyase-like 41 337 IPR011050 -
Seca5g04287 339 ProSitePatterns Pectinesterase signature 2. 190 199 IPR033131 -
Seca5g04287 339 FunFam Pectinesterase 40 339 - -
Seca5g04287 339 Gene3D - 39 338 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04287 Seca-Chr5 100307063 100309161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04287 5 335 Carbohydrate Esterase AT5G47500 35.714 2.46e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04287 - - gmx:100792967 581.252