Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04285 ATGGGAACCCCAGAAGCAGAGGAAGAGCTTCTCAAGAAGATTGAAAGGCTGGAAGTTGGTCACGCTCACCTCAGGCAAGAAATGTCGAAGCTCAAGCTCTCTCAGCGACGCAGGTCTCACTCTGTGTCACCACAGCGTTCGAGGTTGGGTGCTGCTTCGTGTAACAAAGGCCCTTCTTCTCCTCTGCAGAGAGAGAGTCGCAGCAATCATGAGAATCAAAATGGTGGCAAGTATCTCAATATCTTGCAGTCAATGTGCCACTCTGTTCATATATTGGATCTTCAATGCCGTATCATATACTGGAACCCTAGTGCTGAAAACCTGTATGGTTATAAAGTTGAAGAAGTTCTTGGGCAGAATGGGATTGAGCTGCTTGTGGACCCCAGTGAATTTGCCTTAGCCAATGATATATTCAACAGTGTCAAGATGGGAGAGAGTTGGACTGGCCAGTTCCCTGTCAGGAATAAGATGGGGGAGAGGTTTACAACTGTGTCAACCAACACACCTTTCTATGATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCAGTGATTCAAAACCCTTTCTTGAAACCAGAGTTCCCTTTTCAGGAGGGAGGAATGCAGAATCAGATTCAGGTTCCAACTTTCCTAGAAGTGCCATTACAAATAAACTAGGTCTTGACTCTCAGCAGCCACTTCAAGTTGGTCTAGCATCGAAAATTTCAAATTTGGTTAGTCTTAGTATAGCTTGGCGTGTCTTGATGTTGCAATCATTAAAACAGGCATCAAAGGTGAGTGACAAAGTTAAGTCTAGAATTCGGAATAGAGAAAATAATGTTGATGGAGAAGGTGGGAGCGGAGAAAGTCATCATTTTGAGCGTAGTTTCTCAGACTGTGTTCTTTCTGATCAAAGAGAAGATGGTAATTCCAGTGGAGCTAGCACACCCCGAGGAGAGGTGCCACCATCTCCTTTTGTTGTATTTTCTCATGTTGAAGAGAAATCTCCAGGACAAACTACGAGGGACTCTGGCGATGAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAGGGCTGAAGCATGGATTCAAAAGAAAACATTATCATGGCCATGGAGAGGAAATGATCGGGAAGGATCCGAGGCAAGGAATGTCCGTGTTGCTTGGCCTTGGTTGCAGGGTGATCAGGAAAAAGAGCCAGTTAATCAGAAGAATCCTTTTTCTGCGTTGAAGCCAGAAAGCCAGGTAGGTGAAAGTAATCGACCTGTTAATAATGAGGCTTCAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGTAGTACCAGCAGCTGTGGGAGTGGCAGCAGTTCTACTGCCAATAATAAAATGGATGTTGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTCGCTGTCAAGGTTTTCTCAAAGCAAGAATACTCTGATGATGTGATATTATCCTTCAGACAAGAGGTGTCTGTTATGAAAAAACTTCGCCATCCAAATATTCTTCTTTTTATGGGGGCAGTGACTTCACCTCAACGTCTATGCATTGTAACAGAGTTTCTCCCACGCGGAAGCTTGTTTCGTTTGCTCCAAAAGCACATATTCAAATTTGACTGGAGACGGCGAGTTCATATGGCCGTAGATATTGCTCGAGGTGTGAATTATCTTCATCATTGCAACCCCCCTATCATCCATCGAGATTTAAAGTCATCCAATCTTCTAGTTGATAAAAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTATTAAGCACGAAACATATCTCACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCGGATGAGAAATCGGACGTTTACAGCTTTGGGGTGATAATGTGGGAAATTGCAACTGAAAAGATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCAGAAGATGTTGATCCGCAATGGGCTTCTATAATCGAGAGCTGCTGGCACAGGTGTGCATTCTTGTCACTCTATCATACTTCTGACTCCTTATTTCTTCCCCACATCTGTAAATATCCAAACACAAGTATTGTCACCCTTTCATAA 2211 0.4355 MGTPEAEEELLKKIERLEVGHAHLRQEMSKLKLSQRRRSHSVSPQRSRLGAASCNKGPSSPLQRESRSNHENQNGGKYLNILQSMCHSVHILDLQCRIIYWNPSAENLYGYKVEEVLGQNGIELLVDPSEFALANDIFNSVKMGESWTGQFPVRNKMGERFTTVSTNTPFYDDDGSLVGVICVSSDSKPFLETRVPFSGGRNAESDSGSNFPRSAITNKLGLDSQQPLQVGLASKISNLVSLSIAWRVLMLQSLKQASKVSDKVKSRIRNRENNVDGEGGSGESHHFERSFSDCVLSDQREDGNSSGASTPRGEVPPSPFVVFSHVEEKSPGQTTRDSGDESEGKPIHKIITSRAEAWIQKKTLSWPWRGNDREGSEARNVRVAWPWLQGDQEKEPVNQKNPFSALKPESQVGESNRPVNNEASGSWSSFNVNSTSSTSSCGSGSSSTANNKMDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKKLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQKHIFKFDWRRRVHMAVDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRIKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVIMWEIATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWHRCAFLSLYHTSDSLFLPHICKYPNTSIVTLS. 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04285 736 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 207 707 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 390 428 - -
Seca5g04285 736 Pfam PAS domain 91 186 IPR000014 -
Seca5g04285 736 CDD PAS 89 186 IPR000014 -
Seca5g04285 736 Coils Coil 7 27 - -
Seca5g04285 736 ProSiteProfiles PAS repeat profile. 74 145 IPR000014 -
Seca5g04285 736 FunFam PAS domain-containing protein tyrosine kinase 462 546 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 28 74 - -
Seca5g04285 736 SMART pas_2 76 142 IPR000014 -
Seca5g04285 736 Gene3D PAS domain 87 189 - -
Seca5g04285 736 ProSiteProfiles Protein kinase domain profile. 469 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04285 736 NCBIfam PAS domain S-box protein 78 186 IPR000014 -
Seca5g04285 736 Gene3D Phosphorylase Kinase; domain 1 462 546 - -
Seca5g04285 736 SUPERFAMILY Protein kinase-like (PK-like) 455 706 IPR011009 -
Seca5g04285 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Seca5g04285 736 Gene3D Transferase(Phosphotransferase) domain 1 548 714 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 261 346 - -
Seca5g04285 736 Pfam Protein tyrosine and serine/threonine kinase 469 706 IPR001245 GO:0004672|GO:0006468
Seca5g04285 736 CDD STKc_MAP3K-like 475 706 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 261 296 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 330 346 - -
Seca5g04285 736 SUPERFAMILY PYP-like sensor domain (PAS domain) 80 183 IPR035965 -
Seca5g04285 736 MobiDBLite consensus disorder prediction 297 312 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 44 74 - -
Seca5g04285 736 MobiDBLite consensus disorder prediction 394 428 - -
Seca5g04285 736 FunFam PAS domain-containing protein tyrosine kinase family protein 547 709 - -
Seca5g04285 736 SMART serkin_6 469 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04285 Seca-Chr5 100268080 100273925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04285 1 705 MAP Kinase Kinase Kinase AT3G06620 57.067 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca5g04285 PK_Tyr_Ser-Thr 5.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04285 - - gmx:100815858 1037.33