Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04284 ATGGCATCAGCAAGCAGAGGAGGAAATGCTTCAGTGTCGCAGCAACAGGTTCAGAGTTGGAGAACAACAACAACAACAAAGGGAAGCGAAGAGGAGAAGAAGAGAGGGGATTCTATGAGGAAAGCCATAGCACAGTACACTGAAGACGCAAGGCTCCATGCCGTTTTTGAACAATCCGGTGAGTCCTTCGATTACTCACAGTCGGTGCGCGTTACGGCGGAATCGGTGCCGGAGCAGCAGATAACGGCTTACTTGGCGAAAATTCAGCGCGGCGGTTTCATCCAACCCTTCGGTTCCATGATCGCTGTTGACGAGCCCTCGTTTCGCGTCCTTGCTTACTCCGATAACGCTCGTGACATGCTTGGAATCGCTCCACAATCGGTTCCTTCGCTTGAAGATGATTCCTCTTCCTCCACCTTGACCTTTGGTACCGACGTTCGCTCTCTCTTCACACACTCCAGTGCCCTACTCCTTGAGAAGGCTTTCGCCGCACGAGAAATCAGCCTCATGAACTCTATCTGGATCCATTCTCGCTCCTCCGGCAAGCCTTTCTACGGCATCCTCCACCGTATCGACGTTGGCGTTGTCATCGATTTGGAGCCAGCTCGATCGGAGGACCCTGCGCTGTCCATCGCCGGCGCCGTTCAGTCTCAGAAGCTCGCTGTAAGGGCCATTTCTCAGCTGCAGTCACTCCCCGGTGGTGACGTGAAGCTTCTCTGTGACGCGGTGGTTGAGAGCGTGAGGGAATTGACCGGTTATGATAGGGTGATGGTTTATAAGTTTCACGAGGATGAACATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTACATTGGTTTGCATTATCCTGCTACTGACATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTCCTGTGAGGGTGGTTCAGGATGAGACTCTTGTGCAGCCCCTGTGTTTGGTTGGGTCCACGCTTCGTGCCCCTCATGGTTGCCATGCTCAGTATATGGCTAACATGGGCTCCATTGCTTCATTGGTTATGGCTGTTATCATCAATGGGAGCGATGAGGATACTGTTGCGATTGGAGGCCGCAGCACCATGAGGCTGTGGGGTCTTGTTGTTTGCCATCACACTTCTGCTAGGTGCATCCCTTTTCCTCTTAGGTATGCTTGTGAGTTCCTCATGCAGGCCTTTGGGCTGCAATTGAATATGGAGCTTCAGCTGGCAACGCAGTCGTTGGAGAAGCGAGTTTTGAGGACGCAGACTCTGTTGTGTGACATGCTTCTTAGGGACTCTCCTACTGGCATTGTCACTCAGAGTCCTAGTATTATGGACTTGGTCAAGTGTGATGGAGCTGCTCTGTACTATCAAGGAAGCTACCACCCTTTAGGTGTCACCCCAACTGAGTCTCAGATAAGGGACATTATAGAGTGGTTGTTAGCCTTCCATGGTGATTCGACAGGTTTGAGTACTGATAGTTTGGCTGATGCTGGCTACCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCTGTTGCTTATATCACGGAAAAGGATTTCCTTTTCTGGTTTAGATCCCATACCGCAAAGGAGATCAAATGGGGTGGTGCAAAGCATCACCCAGAGGACAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCATTTTTGGAAGTGGTGAAGAGCCGTAGTTTGCCGTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACTCGTTTAAGGAGGCTGCTGACCATAGTGATTCTAAGGCTGTTGTGCATTCCCATTTTGCAGAACTAGAGTTGCAAGGGGTAGATGAACTAAGCTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTCGATGTTGATGGCCTCATAAATGGGTGGAATGCGAAGGTTTCAGAATTAACAGGACTCCCAGTTGAGGAGGCTATGGGGAAGTCATTGGTTCATGAAATCGTGTACAAGGAGTCTCAAGAAACTGCGGCCAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTACACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTGATGGACAAGTTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCCATGGAAAAGCTTACTGGTTGGGGCCGCACGGATGTCATTGGAAAGATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATGCCATAACAAAGTTCATGATTGTTTTGCACAATGCGCTTGGTGGGCATGATACAGATAAATTCCCTTTTACATTTCTTGACCGGCATGGAAAGTATGTGCAAACTTTCTTGACTGCAAATAAGAGAGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCCGAACTTCAACAAGCTATGAAGGTCCAGCGACAACAGGAAAAGAATTGCTTTGCTAGAATGAAAGAGTTGGCTTATATTTGTCAGGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACAGGCTTGACTGATGAGCAAAAACAATTTCTCGATACTAGTGCAGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACGTTGATCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGTAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTGTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAAATTCATGTATATCCAAGACTAAAGCAAATTTCGGATGGGCTCACTCTTCTTCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAGTTGGTTCAAGATATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAAATTCTGAAGTTAATGAATGGCGAAGTGCAATATATCAGGGAGGCAGAACGGTGCTACTTCTTTATTCTTCTTGAACTGCCTGTGACACGGAAAAGTTCTAAAAATGTTAATTAG 3423 0.4642 MASASRGGNASVSQQQVQSWRTTTTTKGSEEEKKRGDSMRKAIAQYTEDARLHAVFEQSGESFDYSQSVRVTAESVPEQQITAYLAKIQRGGFIQPFGSMIAVDEPSFRVLAYSDNARDMLGIAPQSVPSLEDDSSSSTLTFGTDVRSLFTHSSALLLEKAFAAREISLMNSIWIHSRSSGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDETLVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGSDEDTVAIGGRSTMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLATQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGSYHPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEAADHSDSKAVVHSHFAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGLINGWNAKVSELTGLPVEEAMGKSLVHEIVYKESQETAAKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLTGWGRTDVIGKMLVGEVFGSCCQLKGSDAITKFMIVLHNALGGHDTDKFPFTFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQAMKVQRQQEKNCFARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLDTSAACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVYPRLKQISDGLTLLHAEFRMVCPGEGLPPELVQDMFHNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFILLELPVTRKSSKNVN. 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04284 1140 SUPERFAMILY GAF domain-like 215 412 - -
Seca5g04284 1140 FunFam Phytochrome 627 759 - -
Seca5g04284 1140 Gene3D PAS domain 778 888 - -
Seca5g04284 1140 CDD PAS 776 884 IPR000014 -
Seca5g04284 1140 ProSiteProfiles Histidine kinase domain profile. 913 1133 IPR005467 -
Seca5g04284 1140 PANTHER OS08G0260000 PROTEIN 78 968 - -
Seca5g04284 1140 MobiDBLite consensus disorder prediction 1 39 - -
Seca5g04284 1140 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1018 1125 IPR003594 -
Seca5g04284 1140 ProSiteProfiles PAS repeat profile. 631 702 IPR000014 -
Seca5g04284 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 638 746 IPR035965 -
Seca5g04284 1140 ProSitePatterns Phytochrome chromophore attachment site signature. 335 344 IPR013516 -
Seca5g04284 1140 Gene3D PAS domain 87 338 - -
Seca5g04284 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 206 IPR035965 -
Seca5g04284 1140 Gene3D - 216 576 IPR029016 -
Seca5g04284 1140 Pfam His Kinase A (phospho-acceptor) domain 910 970 IPR003661 GO:0000155|GO:0007165
Seca5g04284 1140 SMART gaf_1 235 425 IPR003018 GO:0005515
Seca5g04284 1140 CDD HisKA 906 962 IPR003661 GO:0000155|GO:0007165
Seca5g04284 1140 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 981 1127 IPR036890 -
Seca5g04284 1140 CDD PAS 642 749 IPR000014 -
Seca5g04284 1140 SMART HKATPase_4 1018 1131 IPR003594 -
Seca5g04284 1140 SMART pas_2 633 700 IPR000014 -
Seca5g04284 1140 SMART pas_2 764 834 IPR000014 -
Seca5g04284 1140 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 898 962 IPR036097 GO:0000155|GO:0007165
Seca5g04284 1140 Gene3D - 889 969 - -
Seca5g04284 1140 SUPERFAMILY PYP-like sensor domain (PAS domain) 779 883 IPR035965 -
Seca5g04284 1140 ProSiteProfiles PAS repeat profile. 765 817 IPR000014 -
Seca5g04284 1140 SMART HisKA_10 906 970 IPR003661 GO:0000155|GO:0007165
Seca5g04284 1140 PRINTS Phytochrome signature 445 465 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 634 650 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 335 356 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 563 581 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 653 668 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 250 269 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 530 549 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 150 172 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 747 767 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 PRINTS Phytochrome signature 727 744 IPR001294 GO:0006355|GO:0009584
Seca5g04284 1140 SUPERFAMILY GAF domain-like 423 602 - -
Seca5g04284 1140 Pfam PAS fold 765 884 IPR013767 GO:0006355
Seca5g04284 1140 Pfam PAS fold 634 749 IPR013767 GO:0006355
Seca5g04284 1140 PIRSF Phytochrome_conventional 18 1138 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Seca5g04284 1140 CDD HATPase_Phy-like 1017 1129 IPR044767 -
Seca5g04284 1140 Pfam Phytochrome region 428 603 IPR013515 GO:0006355|GO:0009584
Seca5g04284 1140 FunFam Phytochrome 969 1135 - -
Seca5g04284 1140 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 235 405 IPR016132 -
Seca5g04284 1140 NCBIfam PAS domain S-box protein 638 753 IPR000014 -
Seca5g04284 1140 Pfam PAS fold 83 202 IPR013654 GO:0006355
Seca5g04284 1140 FunFam Phytochrome 887 968 - -
Seca5g04284 1140 Gene3D PAS domain 629 753 - -
Seca5g04284 1140 FunFam Phytochrome 778 886 - -
Seca5g04284 1140 Pfam GAF domain 236 415 IPR003018 GO:0005515
Seca5g04284 1140 Gene3D - 970 1136 IPR036890 -
Seca5g04284 1140 Gene3D - 420 593 IPR043150 -
Seca5g04284 1140 MobiDBLite consensus disorder prediction 1 25 - -
Seca5g04284 1140 FunFam Phytochrome 420 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04284 Seca-Chr5 100254940 100262373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04284 2 1131 Histidine Kinase Gene Family AT4G16250 73.427 0.0 1750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04284 K12121 - gmx:100799831 2027.29