Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04279 ATGGCGTTTTGGTGGCCCTTGCTCGTTCTAGCATTCGCTTTCGCCATCTGCAAGTTCCTTCTGATACTCATTCCTCCCAAGGTTCCTTCCATCGACGTCGATGCTTCCGATGTGTTGGACGATGGAAACCAAGCACCGGAGAACAGCTTCATATATGTGCCTCCGAGGGGAGCGGCACAGCAATCAGGGAAGAAAGTTCAGTGCTATGAACCTGCTACCATGAAATATTTGGGATATGTTCCTGCATTGACGCCGGATGAGGTCAAGGAGCAGGTGGAAAAAGTACGGAAGGCACAAAAAATGTGGGCAAAGACCAGCTTCAAGCAAAGGCGCCAGTTTTTGCGTATACTTTTAAAGTATATAATTAAACATCAAGCACTAATATGCGAAATATCTTCACGTGATACTGGAAAGACAATGGTAGATGCCTCTTTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGTGAACAGTGGCTAAGGCCTGAGTACCGATCCTCTGGAAGATCAATGCTACATAAGAGAGCCAAAGTAGAGTTTCACCCCCTTGGTGTTATTGGTGCCATTGTGTCGTGGAATTATCCTTTCCACAATATTTTTAACCCTATGCTAGCAGCACTTTTTTCTGGAAATGGCATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGAATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAAGTGATAACAGGGTTTGCTGAAACAGGAGAAGCACTGGTGTCTTCTGCTGATAAGGTCATTTTTGTTGGATCTCCTGGGGTTGGTAAGATGATAATGAGAAATGCTGCTGAGACACTTATACCAGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATGTGGACCATGTTGCTCAAATTGCGGTCAGAGCTGTTCTTCAGTCAAGTGGGCAGAACTGTGCTGGGGCTGAACGATTTTATGTCCACAGGAACATTTATGCATCTTTTGTTAGCAAAGTTACCAAAATCATAAAATCTGTTACAGCTGGCCCACCACTTGCTGGAAGGTATGATATGGGAGCGTTATGCATGCATGAGCATTCGGAAAAGCTTGAAGGCCTTGTAAATGATGCTTTAGACAAAGGAGCTGAAATTGTTGCACGTGGAAGTTTTGGACATATAGGTGAAGATGCAGTTGATCAGTATTTTCCTCCTACTGTGATTGTGAATGTGAATCACTCAATGAGATTGATGCAAGAGGAGGCATTTGGACCAATCATGCCAATAATGAAATTTAGCTCTGATGAAGAGGCTATCAAGCTTGCAAATGACTCAACATATGGGCTTGGCTGTGCTGTTTTCTCAGGCAGTCAAAGCCGTGCCAGAGAGATAGCTTCCCAGATACATTGTGGGGTTGCTGCTGTAAATGATTTTGCAGCAACATACATGTGTCAGTCTCTGCCATTTGGGGGTGTGAAACACAGTGGGTTTGGACGATTCGGTGGTGTAGAAGGTTTGCGAGCATGCTGCCTTGTAAAATCAGTTGTTGAAGATAGATGGTGGCCATTCATCAAAACCAAGATACCTAAGCCTATTCAGTATCCTGTAGCAGAAAATGGATTTGAATTTCAGGAATCACTCGTTGAAGCATTGTATGGGCTTAGCATATGGGACCGTTTGCAAGCATTGGTAAACGTTCTGAAAATGCTTACTGAGCAGAACTCTCCCAATAGCAGTAGGAAGGAGAAATGA 1788 0.4374 MAFWWPLLVLAFAFAICKFLLILIPPKVPSIDVDASDVLDDGNQAPENSFIYVPPRGAAQQSGKKVQCYEPATMKYLGYVPALTPDEVKEQVEKVRKAQKMWAKTSFKQRRQFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQWLRPEYRSSGRSMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLAALFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSADKVIFVGSPGVGKMIMRNAAETLIPVTLELGGKDAFIVCEDVDVDHVAQIAVRAVLQSSGQNCAGAERFYVHRNIYASFVSKVTKIIKSVTAGPPLAGRYDMGALCMHEHSEKLEGLVNDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEAIKLANDSTYGLGCAVFSGSQSRAREIASQIHCGVAAVNDFAATYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVAENGFEFQESLVEALYGLSIWDRLQALVNVLKMLTEQNSPNSSRKEK. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04279 595 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Seca5g04279 595 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 59 527 - -
Seca5g04279 595 FunFam Aldehyde dehydrogenase 22A1 305 500 - -
Seca5g04279 595 SUPERFAMILY ALDH-like 60 532 IPR016161 GO:0016491
Seca5g04279 595 CDD ALDH_F15-22 69 531 - -
Seca5g04279 595 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491
Seca5g04279 595 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Seca5g04279 595 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491
Seca5g04279 595 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
Seca5g04279 595 FunFam aldehyde dehydrogenase 22A1 65 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04279 Seca-Chr5 100197173 100204725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04279 1 595 Aldehyde Dehydrogenase Gene Family AT3G66658 80.840 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04279 - - gmx:100816920 1122.84