Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04277 ATGGCCCACAGTTTCAAGGACACATCTCCCAACATTGAAACAAAGTCCACTTCTTTTGAGGCTCATCCCCCAGAAGAGGGAAGCCAATTCTCAGACCCTAAGAACTCATTCTCCCATCCTCCATCTGAAGCACCCCAGAATCCCACATCGGAAGGAGGCTCTGGTCATTCCAAATCCTTCTCTGCTGCTTTCTCAGACATCCTCAAAGGATCCTTACGTGGCCACACGTTGACAATGCCTCAAAATATCAAAACAGAAAACAAACAAATCAAAGATGAAGTGGAAAAGATATGTGCCCACACAGATTACCCTGATGTTTGCATTTCCACCATTCCACCTTTGCTAAACGTAAACAAAAAGTTTGATGTGATAGATGTTCTTGAAGCTGCCATAAAGGCTTGCACCCAGCAGATAAAGTTGACCATATCAAAGTTTGAGAAGCATTCTTTTAAATCATCAGAGATTGCTGCTGCACTCACTGATTGCAGGGAACTGTATTTTAACGCTTTGGGGAACCTTCAGAGAGCATTAGATGCATGCCCATCTCGTGATTTTGGAACCGTTACTGTCATGCTTAGTGCTGTTATGGCGGATGTTTCCACATGTGAAAGTGGGTTTGAGGATCTGAAATCACCATCATCAATCACGTCTGAGAATGATGGTTTCGTTAGCATTACGGTCAGCAATTGCCTTTCAATTGCTGCTTTGATTCCCTATTAA 720 0.4319 MAHSFKDTSPNIETKSTSFEAHPPEEGSQFSDPKNSFSHPPSEAPQNPTSEGGSGHSKSFSAAFSDILKGSLRGHTLTMPQNIKTENKQIKDEVEKICAHTDYPDVCISTIPPLLNVNKKFDVIDVLEAAIKACTQQIKLTISKFEKHSFKSSEIAAALTDCRELYFNALGNLQRALDACPSRDFGTVTVMLSAVMADVSTCESGFEDLKSPSSITSENDGFVSITVSNCLSIAALIPY. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04277 239 Gene3D Invertase/pectin methylesterase inhibitor family protein 91 238 IPR035513 -
Seca5g04277 239 PANTHER PECTINESTERASE INHIBITOR-LIKE 93 233 - -
Seca5g04277 239 Pfam Plant invertase/pectin methylesterase inhibitor 93 233 IPR006501 GO:0004857
Seca5g04277 239 SMART PMEI_2 89 233 IPR006501 GO:0004857
Seca5g04277 239 MobiDBLite consensus disorder prediction 1 59 - -
Seca5g04277 239 CDD PMEI-like_2 92 237 - -
Seca5g04277 239 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 92 237 IPR035513 -
Seca5g04277 239 NCBIfam pectinesterase inhibitor domain 87 233 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04277 Seca-Chr5 100191345 100192064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04277 98 216 Carbohydrate Esterase AT1G23200 26.923 9.08e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04277 - - aprc:113852243 241.506