Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04275 ATGGACACCCAGAAGGAGATGATAGTAGGAAAGGTATGTGAAATCTATGACAAAATCTCTAGGTTAGGAGACCTCAACCCCTCAAAGCAGGTCAATAACCTCTTTACCCAACTTGTTACTATTTGCACCTCCCCATGCCAATTAGATGTTACTCAACTCTCCCAAGAAGTTAAAGAAACTATAGCTAAGCTTATTAGACTTTGTGGGAAAGCTGAGGGACTTCTTGAGAATCATTACTCTGCTCTCATAGGTTCTTATGAGAATCCATTAAACCACATCAAACTCTTCCCTTACTACTCCAATTACCTCAAACTTAGCCATTTGGAATTCACTATGCTCACCACACACTGCACTCAAGTTCCTGCCCAACTTGCCTTTGTTGGCTCTGGTCCACTTCCTCTTACCTCAATCATGTTGGCCACCTATTTCATGAGGCACACATGCTTTCACAACTACGACATGGATCCATCAGCAAATGCCAAAGCTTATGACTTGATCTCATCAGACCCTGACTTATCAAAAAGAATGTTCTTCCACACTACTGATATTGCAGATGTGTCAAATGGCCTTAAGGAGTACAATGTTGTGTTCTTAGCAGCACTGGTAGGAATGGACCAGAAGGAGAAAACTGAAGTTATCAATCACTTAGCTAAACATATGGCTCCTGGAGCTATTCTGTTGCTGAGGAGTGCACATGGAGCTCGAGCATTCCTCTATCCAGTGGTAGATCCTTCTGATCTCAAAGGTTTTGAAGTTCTATCAGTTTTTCACCCAACTGATGAGGTTATAAATTCAGTTATTATTGCAAGAAAGCATTCAGTGAATCAGGGGCTTTACTCTCCAGTGCTGTCTAGCAAATGCCATGAAATTGAAGGTTTTAATCCCTTAAACCATGGGAATGGTATGGATGAGTTGACCGTTGATGAGCAGGCTTGA 936 0.4177 MDTQKEMIVGKVCEIYDKISRLGDLNPSKQVNNLFTQLVTICTSPCQLDVTQLSQEVKETIAKLIRLCGKAEGLLENHYSALIGSYENPLNHIKLFPYYSNYLKLSHLEFTMLTTHCTQVPAQLAFVGSGPLPLTSIMLATYFMRHTCFHNYDMDPSANAKAYDLISSDPDLSKRMFFHTTDIADVSNGLKEYNVVFLAALVGMDQKEKTEVINHLAKHMAPGAILLLRSAHGARAFLYPVVDPSDLKGFEVLSVFHPTDEVINSVIIARKHSVNQGLYSPVLSSKCHEIEGFNPLNHGNGMDELTVDEQA. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04275 311 PANTHER NICOTIANAMINE SYNTHASE 3 3 287 IPR004298 GO:0030410|GO:0030418
Seca5g04275 311 Pfam Nicotianamine synthase protein 3 274 IPR004298 GO:0030410|GO:0030418
Seca5g04275 311 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
Seca5g04275 311 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04275 Seca-Chr5 100181642 100182577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04275 1 288 Nicotianamine Synthase Gene Family AT1G09240 56.333 8.15e-120 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04275 K05953 - gmx:100814069 508.449