Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04274 ATGGAAGACTTCCATTTCAGTGAGTTCAGTATCAGAACAGTGGAGGACAAATATAGTTCATCTAATGATATTTTATGGGCTAAAAAGGTTCAATTTTCCGGAACAGAAGATCAGGGAGAGTCTGGGGGAATTGACTCCCTTTCCTCCAACTTTGGCTTCTTTCCAGATGATCCATCAGAAGAAGAAGGGTTCCTTCTATCCACTAACCAACACAAGTATCATCATCACCAACAACAACCATCATATCATGATTATGAACCATTGGATAACCTACGCTTTGACATGGTCTCTTCACCACTCCAAACTGATGAACAATGTCCAACCATGGTTCCACCTTGTAACCCAACAAAGGACAATAAACACTCCACTCCTTTAGCCTCAGTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGCGGTTATGTGATGATCATGAAGGAAAAATCCTGCATCCAGCTGTACACACAAATGAACTTGGGAGAAAGCTATCAACAGAAGATGTCATGAAGATAGCTGGAACAAGGTTCATTCAAATTCAATCATCTTCACAATCAGAAGGTTTGCACTTATTGGTTAATCATCCTTTTAGTTTTTCCTTCTCTGAACTCACTGATGAAGAGAAAGAGGATGTGGAACTTGCTGAGTCACTCTTGGCTTGTGCTGAGAAAGTTGGCTATCAACAGTTTGAACGCGCTAGTAAATTGCTGAGTCATTGTGAATCACTGTGTTCCAAAACAGGGAACCCTGTTAAGCGTGTTGTTCATTATTTTGCTGAAGCTCTTCGCCAAAAGATAGATAGTGAAACAGGAAGGGTTTCATCTAAGGATTTGCAAAAGATTGTGTCATTTGATCCTGAAGAGGAAAACAAGTATATAAACCCCACTCTTTTTGCATTTTATGAAGTGCTTCCTTTCTGTAAGGTTACAGTGTTCACAGCAGTTCAAGCTATAATAGAAAATGTAACTGAGGCAAAGAAGATTCATGTTATTGATCTTGAAATCAGAAAGGGGGTACAATGGACAATCCTTATGCAAGCACTTGAGTCAAGACATGAATGTCCAATTGAGCTTCTAAAGATAACAGCTATTGTAAGTGGAACCACTTCAAAGCTTATGATTGAAGACACTGGTGAGAGATTGAAGGATTTTGCACAGAGCTTGAACTTACCTTTCTCATTCAATATAGTTATGGTATCAGACATGCTACATCTCAAAGAAGATCTTTTTGAAATAGATCCTGAGGAAACAGTTACAGTTTACTCTCAGTTTGCACTTAGAAGCAAGATTCAACAATCAGAACAGCTTGAATCTCTCATGAGAGTGATTAGAACCATTAGTCCTGTAGTAATGGTGGTAGCTGAACTTGAGGCTAACCACAATTCTACATCTTTTGTGAACCGTTTCATTGAAGCTCTTTTCTACTTCAGTGCATTCTTTGATTGTCTTGAGGCTTGTATGGAACGGGATGAGCAGAACCGAATGGATATAGAATCACTGTTCGGTCTTGGAATCAGGAATATGATGGGTGCAGAGGGAGCAGAAAGAAAGAGTAGAAGTGTAAAGATTGATGTGTGGAGGGCATTTTTCTCGCGCTTTGGAATGGTGGAGACAGAATTGAGCACAATATCTCTATTCCAAGCGGAACTTGTGGCTAAAAGATTTCCTTGTGGAAGTTCTTGCACATTGGATATGAATGGGCATAGCCTTCTTATTGGGTGGAAGGGAACACCAATTAACTCTGTTTCTGTCTGGAAATTTATGTGA 1764 0.3968 MEDFHFSEFSIRTVEDKYSSSNDILWAKKVQFSGTEDQGESGGIDSLSSNFGFFPDDPSEEEGFLLSTNQHKYHHHQQQPSYHDYEPLDNLRFDMVSSPLQTDEQCPTMVPPCNPTKDNKHSTPLASVEILKNYGKGFKRLCDDHEGKILHPAVHTNELGRKLSTEDVMKIAGTRFIQIQSSSQSEGLHLLVNHPFSFSFSELTDEEKEDVELAESLLACAEKVGYQQFERASKLLSHCESLCSKTGNPVKRVVHYFAEALRQKIDSETGRVSSKDLQKIVSFDPEEENKYINPTLFAFYEVLPFCKVTVFTAVQAIIENVTEAKKIHVIDLEIRKGVQWTILMQALESRHECPIELLKITAIVSGTTSKLMIEDTGERLKDFAQSLNLPFSFNIVMVSDMLHLKEDLFEIDPEETVTVYSQFALRSKIQQSEQLESLMRVIRTISPVVMVVAELEANHNSTSFVNRFIEALFYFSAFFDCLEACMERDEQNRMDIESLFGLGIRNMMGAEGAERKSRSVKIDVWRAFFSRFGMVETELSTISLFQAELVAKRFPCGSSCTLDMNGHSLLIGWKGTPINSVSVWKFM. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04274 587 ProSiteProfiles GRAS family profile. 204 585 IPR005202 -
Seca5g04274 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 182 575 IPR005202 -
Seca5g04274 587 Pfam GRAS domain family 214 585 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04274 Seca-Chr5 100174317 100176080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04274 203 586 GRAS Transcription Factor Family AT3G03450 32.383 1.72e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g04274 GRAS 1.2e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04274 - - gmx:100818523 806.979