Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04253 ATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGTAATCATAAATATTTCACGATCCATGTCAAGCCGGTGCATTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACGGTCAAAGAAGCCCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGCCAAGATAATCAGGGCTTTGTTCGTAGATGTTACTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAGGAGATACAAGGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGGCTCACCGTTTATTTTGTCAGAAGACTTAGAATCTGGGACCAACAGTGCTTATACTGGTGGGCTTAATGGAAATTTAACAGTCAAAAATCATGAACTAAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTGGTTTCAAATGTTAACACCTCTACTATACCTAATGGAGGCAATGAACCATGTTTATATCAAGAAAATCAAAGTTTACTGAATGGAAGCTTTGGCAACGTTGCCAGTAATCCTTCTGCAGAAATTCCTTCTTTTGTGAATCAGGGGTTGCAAAGTCAGGATCAGGGCTTGCAGAGTCAGGACAGCTTCGGGAAGTGGATAAACAACATGATATCTGATACACCATGTTCTGTAGATGAGCCAGCTCTTGAATCATCAATTTCTTCATCTGTTCATAAACCATATTCATCACTGGTGGTGGATAGTCAGCGATCTTCTCTGCCAGAACAAGTATTCAATCTCACCGAGGTGTCCCCTGTTTGGGCGTCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATTTTTTAATCATGATTATCAACACATTGCAAAGTCCAATCTACTGTGTGTCTGTGGGGATGTAAGTGTTCCTGTAGAAATTGTTCAGGCTGGGGTTTACCGATGCTGGGTATCACCACATTCTCCTGGATTCGTGAATCTCTATTTGAGCTTTGATGGCGATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGCACACCTATTTTGCATGATCCTGCTGCTTCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGACGAGACTTGCTCATTTGCTCTTTACTACACAAAAGAACCTTGATGTTTACTCTAGTAAAGTATCACCTAATGCACTGGAAGAGGCTAAAATTTTTTCCCTCAAAACATCATATATTTCCAAAAGTTGGCAGTACCTGATGAAGTCAACTGGTGACAATACAACTCCGTTTTCACAAGCAAAAGATGACTTGTTTGAAATTGCATTGAAAAACAAACTAAAGGAATGGCTTTTGGAACGGATTCTCTTAGGTTGTAAGACTTCTGAGTATGATGCACAGGGCCAAGGAGTAATTCATTTGTGCGCAGTTTTGGGATATACTTGGGCTATTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCGGCATATTATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCAAACTTAGTCACGGATCCAACTCCAGAAAATCCTGGTGGATGTACTGCTGCTGATCTAGCTTATACTAAGGGATATGATGGTTTAGCAGCTTATCTTTCAGAGAAGTCTCTGGTTGAGCAGTTTAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACATCTGATCCAGTAAATTCTGAGAACCTTACTGAGGACCAGCTGTACCTAAAGGATACATTGGCAGCTTACCGAATAACTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCATTAAAATTGCGTTCTAAGGCAATTGAATTTTATAACCCAGAGGAAGAAGCACGCCGAATAGTAGCAGCAATGAAGATCCAACATGCCTTCCGCAACTATGAAACCAGGAAAATGATGGCAGCTGCTGCCCGGATCCAGCATAGATTCCGTACATGGAAATATCGTAGAGAATTTCTCCATATGCGACGTCAGGCTATTAGAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGGAAACAATATCGTAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGCAATCCTGCGTTGGCGTTTAAAGAGAAAAGGCTTCCGCGGCCTGCAGGTGAATCCTGTCCAAGAAATCAAAGATGAGAAGCAGGAAAGTGATGTAGAAGAGGATTTCTTCCGAACTGGTAGAAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTCCAGGCCATGTTCCGTTCCAAGAAAGCACAACAAGAGTATACCAGGATGAAGATGGCACATAGTCAAGTGAAGCTGGAACTGGAATTAGAAGAACTACTCAATTCTGAAGTTGACATGTTAACAACGCAGACATCCTAG 2544 0.4186 MEEAKSRWLRPNEIHAILCNHKYFTIHVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQGFVRRCYWLLDKSLEHIVLVHYRETQEIQGSPVTPVNSNSSSGSPFILSEDLESGTNSAYTGGLNGNLTVKNHELRLHEINTLEWDDLVSNVNTSTIPNGGNEPCLYQENQSLLNGSFGNVASNPSAEIPSFVNQGLQSQDQGLQSQDSFGKWINNMISDTPCSVDEPALESSISSSVHKPYSSLVVDSQRSSLPEQVFNLTEVSPVWASSTEKTKVLVTGFFNHDYQHIAKSNLLCVCGDVSVPVEIVQAGVYRCWVSPHSPGFVNLYLSFDGDKPISQVVNFEYRTPILHDPAASMEEKYNWNEFRLQTRLAHLLFTTQKNLDVYSSKVSPNALEEAKIFSLKTSYISKSWQYLMKSTGDNTTPFSQAKDDLFEIALKNKLKEWLLERILLGCKTSEYDAQGQGVIHLCAVLGYTWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSCGARPNLVTDPTPENPGGCTAADLAYTKGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTSDPVNSENLTEDQLYLKDTLAAYRITAEAAARIQAAFREHSLKLRSKAIEFYNPEEEARRIVAAMKIQHAFRNYETRKMMAAAARIQHRFRTWKYRREFLHMRRQAIRIQAAFRGFQVRKQYRKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVQEIKDEKQESDVEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQQEYTRMKMAHSQVKLELELEELLNSEVDMLTTQTS. 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04253 847 FunFam Calmodulin-binding transcription activator 2 691 739 - -
Seca5g04253 847 Pfam IQ calmodulin-binding motif 717 736 IPR000048 GO:0005515
Seca5g04253 847 SUPERFAMILY E set domains 292 379 IPR014756 -
Seca5g04253 847 SMART ANK_2a 567 598 IPR002110 GO:0005515
Seca5g04253 847 SMART ANK_2a 528 557 IPR002110 GO:0005515
Seca5g04253 847 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 824 - -
Seca5g04253 847 SMART iq_5 672 694 IPR000048 GO:0005515
Seca5g04253 847 SMART iq_5 714 736 IPR000048 GO:0005515
Seca5g04253 847 SMART iq_5 794 816 IPR000048 GO:0005515
Seca5g04253 847 ProSiteProfiles IQ motif profile. 796 824 IPR000048 GO:0005515
Seca5g04253 847 Pfam Ankyrin repeats (3 copies) 470 557 IPR002110 GO:0005515
Seca5g04253 847 Pfam CG-1 domain 3 116 IPR005559 GO:0003677
Seca5g04253 847 Gene3D - 454 597 IPR036770 -
Seca5g04253 847 FunFam Calmodulin-binding transcription activator 5 287 383 - -
Seca5g04253 847 ProSiteProfiles IQ motif profile. 673 702 IPR000048 GO:0005515
Seca5g04253 847 FunFam calmodulin-binding transcription activator 5 458 598 - -
Seca5g04253 847 ProSiteProfiles Ankyrin repeat region circular profile. 528 556 - -
Seca5g04253 847 Gene3D - 691 739 - -
Seca5g04253 847 SUPERFAMILY Ankyrin repeat 466 590 IPR036770 -
Seca5g04253 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 742 IPR027417 -
Seca5g04253 847 ProSiteProfiles Ankyrin repeat profile. 528 560 IPR002110 GO:0005515
Seca5g04253 847 Gene3D Immunoglobulins 287 382 IPR013783 -
Seca5g04253 847 ProSiteProfiles IQ motif profile. 715 739 IPR000048 GO:0005515
Seca5g04253 847 ProSiteProfiles CG-1 DNA-binding domain profile. 1 123 IPR005559 GO:0003677
Seca5g04253 847 ProSiteProfiles IQ motif profile. 692 718 IPR000048 GO:0005515
Seca5g04253 847 SMART CG_1_2 1 118 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04253 Seca-Chr5 99990893 100000126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04253 1 828 CAMTA Transcription Factor Family AT3G16940 59.113 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca5g04253 CG-1 5.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04253 K21596 - gmx:100819198 1338.55