Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04252 ATGAAAAAGGCCCTCCCTGCCAATGGAAAAATCGCTAAGGATGCCAAAGAGACCGTTCAAGAGTGTGCGTCTCCAATTTCATCATGCTCATCACTAATGAGTGTGGTTATCCTTCCTACTATTGACTTCTGTTTCCTTTCCTTGTCCTCTGTTACAAGTCTGAATTTGGTCTTCTTTTGGCTTACTATTATTTGTGTGACCGTACGGATTTCTTTGGCTCATCAAAAAAGGGCAGTTGCTTACATTCCTTTGACTATCTTGGCAGTTCCAGCCTCTACTCACTGTGAGAATCTTTGA 297 0.4209 MKKALPANGKIAKDAKETVQECASPISSCSSLMSVVILPTIDFCFLSLSSVTSLNLVFFWLTIICVTVRISLAHQKRAVAYIPLTILAVPASTHCENL. 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04252 98 Gene3D Histone, subunit A 1 54 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04252 Seca-Chr5 99980663 99982862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04252 1 26 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.769 4.73e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04252 K08065 - atri:130827649 49.6766