Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04244 ATGGGGAGAGCTCCTTGCTGTGAGAAAGTTGGATTGAGAAAAGGAAGATGGAGCGCTGAAGAGGATAAGATCTTAACCGATTACATCCACCAATATGGCGAAGGATCTTGGAGGTCCTTGCCCAAAAATGCAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGACTAAGATGGATAAACTACTTGAGGGGAGACGTGAAGAGAGGGAACATCACTTCTCAAGAGGAACAGATCATCGTCAAGTTGCATGCTGCTCTTGGTAATAGGTGGTCTGTGATAGCAGCACATTTACCAGGAAGAACAGATAATGAAATAAAGAACTATTGGAACTCTCATTTGAGGAGAAAGATTTACTGTTTCATGAGATCATTAAATGAGTCTCCACCAATTGACATGGCTGCTGTAAATGTAGCTGTTACATCCAAGAGAAGAGGCAGAGGAGGGACAAGAAATTATAAGCCTGCATCATCCTTGGAAGAGGACAAGAAGAAATTTGAATCAATAGTGCCTAAAATGGAACCAACTTATTGTAATAAAAGAGAAGCTGAAGAAATTTCCATGATGGATGATGCTTATTTTGAAATGGATCAGGGCCACACAAATAGTACAGCTGATGGAGATATTAAGGGCTTAGGACCATATCAATGGTCAGTTGATGAAATTATGAAACTTAGTGACATGTTTGGAAATGGGGTAGGGAATTTAACCCTTCAAGAGGAACCTAATGGAAATGACTACTGTGGGCAGATGCAGATAATGGGAACAAGTCAAGAGCAGAGCAAAAGTGGTGTTTGGAGCTCATCAAATGCAGAGAGTGGAGAATGGTACACTAGTTGCTCCTCAGTGAATTCTACCATTAATTATCAATGGTGTGATTGGGATTTGGCAGGTAGTGTTCAATCCCATAATCACTGGGACCCTTGTGAAGAAGACCAAATAATGAATTGCTTGTGGGGTGCTAGCATTGCTGGAATAAATTGA 981 0.4118 MGRAPCCEKVGLRKGRWSAEEDKILTDYIHQYGEGSWRSLPKNAAGLLRCGKSCRLRWINYLRGDVKRGNITSQEEQIIVKLHAALGNRWSVIAAHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESPPIDMAAVNVAVTSKRRGRGGTRNYKPASSLEEDKKKFESIVPKMEPTYCNKREAEEISMMDDAYFEMDQGHTNSTADGDIKGLGPYQWSVDEIMKLSDMFGNGVGNLTLQEEPNGNDYCGQMQIMGTSQEQSKSGVWSSSNAESGEWYTSCSSVNSTINYQWCDWDLAGSVQSHNHWDPCEEDQIMNCLWGASIAGIN. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04244 326 Gene3D - 72 117 - -
Seca5g04244 326 FunFam MYB-related transcription factor 13 67 - -
Seca5g04244 326 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 178 - -
Seca5g04244 326 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca5g04244 326 SMART sant 67 115 IPR001005 -
Seca5g04244 326 SMART sant 13 64 IPR001005 -
Seca5g04244 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca5g04244 326 CDD SANT 72 113 IPR001005 -
Seca5g04244 326 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca5g04244 326 Gene3D - 11 68 - -
Seca5g04244 326 CDD SANT 16 62 IPR001005 -
Seca5g04244 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca5g04244 326 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca5g04244 326 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Seca5g04244 326 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04244 Seca-Chr5 99893343 99897448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04244 1 306 MYB Transcription Factor Family AT5G49330 41.642 2.05e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g04244 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04244 K09422 - gmx:100819041 423.32