Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04243 ATGGGATTAGATTCCTTGCCTCCTTCCAGTTTTTCTGATCCATATTCTACCCCATTTTTGGATACCAGATCCCTTCAAGATGCTCAATTCTTCAGGAAAAACCCCAGTCATCAGTATGACCATCATACTCTATATTCTGGAAAGTTGGTTGAAAAGGTTGAAGGCTCTTCTAGGAACTTTATGGAGCCAAAGCCTCAAAAGACCATTACTAGGCCAATTGAAAAGTTCCAAACAGAAGTATTGCCTCCAAAATCAGCTAAAACAATTCCTGTTACACACCATAAACTTTTATCCCCCATTAAGAGTCCTGGATTTATTCCAACCAACAATGCTGCTTATATAATGGAGGCTGCAGCAAGAATTATTGAACCTGGATCCCAAATTAGTACAAAGGCTAAAACACCTCTAGTAGGATCATCAACAGTATCATTGAGGGTCAAAGATCTTAAAGATAAGTTGGAGTCTTCGCAAAAAGGACCTCTGATTGTGTCATCTTCCATGGCCTCTCGAGCTCGAGAGCTTAAAGAAAGAAGAGAAATTTCTCATAGAACCACCAGGATTGCAGAACCTTCTCAAAGGTCAGTTGAGTCAAATGCTGTTAAGTATCTAAAGGGACAATCTTTAAACAGAAGCTGGAATGGATCTGTGGATACATCCATCAGATCTCCTGCACATGCAGAGGAAGATTCTTCATTGAAGAATAAGGGGAAGTCTGTTTCACTTGCAATCCAAGCAAAAGTGAATGTTCAGAAAAGGGAAGGTTTGAGTTTGACTGGTGGCAGAAGTTTGACAGGTCAAAAGGAGCATCTTGACATGAAATCCAACCAGCCCTTGAAGGCAAACCAACCATCAAAGGCAAATGTTCAGAACAATTTGCAAAAGAAATCTTCTGGTCAGAATTCTTCTGGTGTTCTCAGGCAGAATAATCTGAAACAGAATTATTCAATTGATAAAGACAAATTATCATCAAAGCCATTGGTTTCCAATTCACAAGGTAGGAAAGTTCTGACTGGGGATTCCTCTCATGGACGTCATAGAAGCTCTAGTAGTAAGTCCATTGCAAAATCTAAAGTTGGGTCCAGAAAGTCAGCCATTGAGGTGACAGATAGTGAAAAGGAAGTTTTATATACCAGCACAAACAATTTTCCTAGAAAGAAAAGGTCTACAGACAAGGATTGGAATGATAGGGTTGTGGATAATTTGTTCATTGATAAAACCCAGAAGCCTGTTAAGTCTAATCTAGTTAGTAATAAACAGTATGGTTGGGCTGAAGAAGTAAAAAAGAAAGACATGGATGTGGTTTCCTTCACATTTACCACACCATTAACTAGGAGCAATCCAGGTTTTGAGGCATCTGGACAGGCTGGCCAGAATAGAAATGGTCTTTCCTTGGATCAACGCATTAAAAGAGTGTTGCTTGACACAGACAATACAAGGTCTCCAATAGGATACAATGTGATTGGTGGTGATGCCTTAGGTATCCTTTTGGAACAGAAGTTGAAGGAATTGACACATGGAGTTGAAACCTCTTGCAATGATGGTTCTAAAGTGAGGCAACCTTCCATTACTGCACCAATGTCAGAGGAACAAGTAACAAACCTTAATATCCTCAATCCAAGATTGCAACATAAGAAAGACCAAGATATGTTATTTACAGACAAGTTAAGCAGTAGCCATGATTCTGACATCTCCTTCACCAGTCTTCCTGAATTATCAATGAAACATAACTCATGGATCGATGAGATGGAACCACAGTTATTCAATTGTCGACACCCAAGTCCAATCTCTGTTCTTGAGCCTTCTTTTTCAATTGAAAGCTGTGAATCTTCAGCAAGTGCTGATTTTACTAGTACAGAAGGAAGCAAGTTGTGCTCTTCTGTTCAAGGTCAGGAGGTTGTTCATGGCTTTAATTTTTCAAGGAAGTTCTGTCCTACTGAATCTGATATGGAGTTATCTGATTCAGCTTCTTCAAGTACATTGTCTGTCATGAAGTTTGGAAGATCAAGTACATGGGAGTTGGACTATGTGAAAGATATTTTGTGTAATGTTGAGTTGATGTATATGGACTTTTCTGTTGGTAGAGCACGTGAGATTGTAAACTCTCATCTATTCAACCAATTGGAAAGCCGAAAGGGAGGGTTTAGGAGTGATGATGAATCTAGGATAAGAAGGAAAGTTATGTTTGATTGTGTGAGTGAATGTATGGACTTGAGATGCAAGCCTTATGTAGGGGGAGGATACAAAATGTGGACCAAAGGGGTTGCAATGGTGAAAAGAAAGGAATGGTTGGCAGAAGATGTGTACAAGGAGATTTCAAGTTGGAGAGGGATGGGGGATTCAATGGTAGATGAGCTTGTGGACAAGGACATGAGCAGCCAATATGGAAGATGGCTAGATTTTGAGGTTGATGCTTTTGAACTGGGAGCAGAGGTGGTGGACCAAATATTCAATTCTTTGGTTGATGATGCTGTCACTGAATTTTTGCAATTGTAA 2493 0.3971 MGLDSLPPSSFSDPYSTPFLDTRSLQDAQFFRKNPSHQYDHHTLYSGKLVEKVEGSSRNFMEPKPQKTITRPIEKFQTEVLPPKSAKTIPVTHHKLLSPIKSPGFIPTNNAAYIMEAAARIIEPGSQISTKAKTPLVGSSTVSLRVKDLKDKLESSQKGPLIVSSSMASRARELKERREISHRTTRIAEPSQRSVESNAVKYLKGQSLNRSWNGSVDTSIRSPAHAEEDSSLKNKGKSVSLAIQAKVNVQKREGLSLTGGRSLTGQKEHLDMKSNQPLKANQPSKANVQNNLQKKSSGQNSSGVLRQNNLKQNYSIDKDKLSSKPLVSNSQGRKVLTGDSSHGRHRSSSSKSIAKSKVGSRKSAIEVTDSEKEVLYTSTNNFPRKKRSTDKDWNDRVVDNLFIDKTQKPVKSNLVSNKQYGWAEEVKKKDMDVVSFTFTTPLTRSNPGFEASGQAGQNRNGLSLDQRIKRVLLDTDNTRSPIGYNVIGGDALGILLEQKLKELTHGVETSCNDGSKVRQPSITAPMSEEQVTNLNILNPRLQHKKDQDMLFTDKLSSSHDSDISFTSLPELSMKHNSWIDEMEPQLFNCRHPSPISVLEPSFSIESCESSASADFTSTEGSKLCSSVQGQEVVHGFNFSRKFCPTESDMELSDSASSSTLSVMKFGRSSTWELDYVKDILCNVELMYMDFSVGRAREIVNSHLFNQLESRKGGFRSDDESRIRRKVMFDCVSECMDLRCKPYVGGGYKMWTKGVAMVKRKEWLAEDVYKEISSWRGMGDSMVDELVDKDMSSQYGRWLDFEVDAFELGAEVVDQIFNSLVDDAVTEFLQL. 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04243 830 MobiDBLite consensus disorder prediction 210 236 - -
Seca5g04243 830 MobiDBLite consensus disorder prediction 170 186 - -
Seca5g04243 830 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 826 - -
Seca5g04243 830 Pfam Domain of unknown function (DUF4378) 672 822 IPR025486 -
Seca5g04243 830 MobiDBLite consensus disorder prediction 155 196 - -
Seca5g04243 830 MobiDBLite consensus disorder prediction 274 366 - -
Seca5g04243 830 MobiDBLite consensus disorder prediction 275 316 - -
Seca5g04243 830 MobiDBLite consensus disorder prediction 322 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04243 Seca-Chr5 99885461 99888926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04243 1 828 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 29.752 1.64e-75 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04243 - - gmx:100777900 1248.03