Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04240 ATGGATGCAGCACCAGTGAATAACAAGACTGGTATTTTCAGATGTCTCTTCTGTTGTCGTGAATTTTCCAATTCACAAGCTTTGGGAGGGCATCAAAATGCGCACAGGAGAGAAAGGCAGAGAGCACACTTTCTTGTTCCCATACTTCCCCATCATCAACGCTTCATAAAAACTGGCTATCCTATCATAGCAGCACATCATGAGAAACCTTGTGGGTTCCAGCCACAACTACCTATGGCGTATGATGAGGTTGAGGGACCTCTTTTTATGAGATCAGCAGCTGCAGGCACGTCCAGAAAAAATGTGCCTTTCAAACAAGTACAGAACCTTGATGGTGATGGTGATGTTGATCTTAACTTGACTCTTGCTAGTAGTAGTATTATACCACCCTCCAATTCCACCAGGGACGACGTCAATTAA 420 0.4405 MDAAPVNNKTGIFRCLFCCREFSNSQALGGHQNAHRRERQRAHFLVPILPHHQRFIKTGYPIIAAHHEKPCGFQPQLPMAYDEVEGPLFMRSAAAGTSRKNVPFKQVQNLDGDGDVDLNLTLASSSIIPPSNSTRDDVN. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04240 139 PANTHER ZINC FINGER PROTEIN 5 13 46 IPR044299 GO:0010090
Seca5g04240 139 SUPERFAMILY beta-beta-alpha zinc fingers 11 40 IPR036236 -
Seca5g04240 139 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Seca5g04240 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 40 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04240 Seca-Chr5 99862028 99862447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04240 13 65 C2H2 Transcription Factor Family AT1G67030 52.632 8.00e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04240 - - tpra:123887517 92.4337