LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04238	ATGTCAGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCGGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTCATCTCTCAAGAAGCTGCTTATGAATTTTACTGCAGTTTTGCTAAACAATGTGGCTTTTCTATTAGACGACACCGCACTCGAGGGAAAGATGGGGTTGGCCGGGGAGTTACAAGGAGGGACTTTACTTGCCATCGTGGTGGATATCCCCAGACTAAACCTTCTGATGATGGGAAGGTACAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACCTGCGCATTGTAAAAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATACTGCCCAATATCTCCTGATGACAAGAGTCGGATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGTTAAGATTGATGGAGCTAGAGAAAGGCGTTAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAATTTGCTGCAGTCTTTCAGAAATGTTGATAGAGATAATGATGCTATTGATCTGATCACTATGTGCAAGAAATTAAAAGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGACAATAACAATAGGCTTGAGCATATTGCATGGTCCTATGGCTCATCCATTCAAACATATGAGGCATTTGGAGATGCTGTTGTTTTCGATACAACCTATCGAGTGGAGGCTTATGACATGCTGTTGGGAATTTGGCTTGGAGTGGACAATAACGGAATGATATGTTTCTTTAGTTGTGCACTTTTACGAGATGAAAATATACAGTCTTTTTCATGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATATTAACTGATCATAACACGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACTAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAACTGGTTGAAGATTTTGAAGAAGGGTGGAGGCAAATGGTTGATAAATATGGACTCCACGCAAATAAACATATTATTAGCCTATATTCATTAAGGATGTTTTGGGCTTTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAGTTCATTAATGCTTTCATCCAACGGTTCTTGAGTGCCCAATCTCAACCAGATCGCTTTTTAGAGCAAGTCTGTGATATATATAATTTATTTCCTTAA	1443	0.3992	MSEGTSLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFISQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQTKPSDDGKVQRNRKSSRCGCQAYLRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLITMCKKLKDENHNFKYEFKIDNNNRLEHIAWSYGSSIQTYEAFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMICFFSCALLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVEMPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVDKYGLHANKHIISLYSLRMFWALPFLRRYFFAGLTSTCQSEFINAFIQRFLSAQSQPDRFLEQVCDIYNLFP.	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04238	480	Pfam	FAR1 DNA-binding domain	59	152	IPR004330	-
	Seca5g04238	480	MobiDBLite	consensus disorder prediction	1	31	-	-
	Seca5g04238	480	MobiDBLite	consensus disorder prediction	1	23	-	-
	Seca5g04238	480	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	39	472	IPR031052	GO:0006355
	Seca5g04238	480	MobiDBLite	consensus disorder prediction	94	114	-	-
	Seca5g04238	480	Pfam	MULE transposase domain	275	367	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04238	Seca-Chr5	99826078	99831051	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca5g04238		MULE	1.6e-21	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04238	-		-	gmx:100778434	934.865