Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04232 ATGAATCTCAAAGCCTCCATGTCAACGGCAAGTTCAAGTTCTTCTCTCAAGTCCGGCGACGGCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTGGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTCCGTGCTTGCCTCTATGAAGTTACAAAATGCAAGCGAGCAGAGGTTGCATTGTCTCTTCTGAGAGAAAACAAAAATGGCTTTGATATAGTTCTAAGTGATGTTCATATGCCAGACATGGATGGATTTAAACTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATAATGATGTCAGCTGATGATGGGAAGAATGTGGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACCTGATTAAACCTGTGCGTATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCACAGAAGAAGGAGATCGACAGCAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGAATGAAGGTAAAAGCAACTCAAAAAAGAGGAGGGATATTGAGGATGAAGATGGAGAGGACAGGGAGGATACTTCCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGTCACCTCCAGGGAGCTAACTCATTTTTCATCTGGATTTTGGTACAGAAATACCGTTTGTATCTTCGAAGGGTGAGTGGAGTTTCCCAGCAGCAGAGCAACTTTAATAACTCCTTCATCAGCTCACAAGATTCAACATTTGGGGCAACTTCAATAAATGGAATAGATCTTCAAACTCTTCCAGTTTCTGGGCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCACTTGCAAAAGCAGGTATTCCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCAGTTTTGAGAACTCAAAATTAAGATTTGGAGAAGGGCAACTGCAAAATTTGAGCAGCAGTAAACCAATGAACTTTCTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGTTTGCCAATTTGCACCAGTCTACCCAATCCCTTGGAAACTTTAATATGCGATTCAATGCTTCTGCTGTGCAGAGAAACCCCTTGTTGATGCAGATATCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATAGTGGTTCTCATGTTAATAGGTTTTCATCATCTTTGGTGCAGCCTACAGGACCAAATGGAATATCTAATGGTTTTCTAGGTAATGGGATTGCTGATACCAGCAACATATCTGCTGCCTATAATCCAGTTCCACAAAGGTCTTCATTGTTGAGTTTTCCCATGAATCAAACCACTGAAATGCCAGTGAGTAGTTTCCCTCTTAGAAGCACTCCAGGCATATCCAGTATCACTACAAAAGGCATGTTTCATGAGGAAGTAGGTACTTCAGGAATTAAAGGATCTAGTGGATTTGCTCCAAGTTATGATATTTTTAATGAACTCCATCAGAAATCCCATGATTGGGACTTACCAAACACTGGCCTGACCTATGATGCTTCTCAGCATGCAAATCCTTTACAAACTAACATTGATGACTCACCATCAACTTTAGTCCATCAAGGCTTTTCCTCTATCCAACAAACTGGACAAAATAGAGATGCTACTTTGATTGGAAAAGCTATGATCTCAATAGGTGAAGGCATGAATCAAGGTAATCTCCAAAATGCCAGTCAAGACCTCAATTCGCTTCTTGTTGACAATTCAGTAAGGATTAAGGCTGAAAGTAATCCTGATCCAAGCTCCCAGATTAACCTCTTCTCTGAGCAATATGGACAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAAGAAGGCATTGGACCAGTTGAAAATGAGTTTGACTTCGATGGATATTCCATAGACAACATTCCAGTTTAG 2064 0.4259 MNLKASMSTASSSSSLKSGDGVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKSGWKDLEQSGGTEEGDRQQKAFDDADYSSSANEGKSNSKKRRDIEDEDGEDREDTSSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQGANSFFIWILVQKYRLYLRRVSGVSQQQSNFNNSFISSQDSTFGATSINGIDLQTLPVSGQLQAQSLAKLQAAGLGRSLAKAGIPMPLVEQKNLFSFENSKLRFGEGQLQNLSSSKPMNFLHGIPTNMEPKQFANLHQSTQSLGNFNMRFNASAVQRNPLLMQISQSQPRGQMLSENSGSHVNRFSSSLVQPTGPNGISNGFLGNGIADTSNISAAYNPVPQRSSLLSFPMNQTTEMPVSSFPLRSTPGISSITTKGMFHEEVGTSGIKGSSGFAPSYDIFNELHQKSHDWDLPNTGLTYDASQHANPLQTNIDDSPSTLVHQGFSSIQQTGQNRDATLIGKAMISIGEGMNQGNLQNASQDLNSLLVDNSVRIKAESNPDPSSQINLFSEQYGQEDLMSALLKQQEGIGPVENEFDFDGYSIDNIPV. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04232 687 SUPERFAMILY CheY-like 29 150 IPR011006 -
Seca5g04232 687 FunFam Two-component response regulator 206 262 - -
Seca5g04232 687 CDD REC_typeB_ARR-like 32 146 - -
Seca5g04232 687 SMART REC_2 30 142 IPR001789 GO:0000160
Seca5g04232 687 Pfam Response regulator receiver domain 32 140 IPR001789 GO:0000160
Seca5g04232 687 Pfam Myb-like DNA-binding domain 212 259 IPR001005 -
Seca5g04232 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 354 IPR045279 GO:0009736
Seca5g04232 687 SUPERFAMILY Homeodomain-like 208 259 IPR009057 -
Seca5g04232 687 Gene3D - 207 281 - -
Seca5g04232 687 MobiDBLite consensus disorder prediction 153 207 - -
Seca5g04232 687 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g04232 687 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 259 IPR006447 GO:0003677
Seca5g04232 687 MobiDBLite consensus disorder prediction 185 207 - -
Seca5g04232 687 PIRSF RR_ARR_type-B 6 679 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca5g04232 687 FunFam Two-component response regulator 30 167 - -
Seca5g04232 687 ProSiteProfiles Response regulatory domain profile. 31 146 IPR001789 GO:0000160
Seca5g04232 687 MobiDBLite consensus disorder prediction 153 173 - -
Seca5g04232 687 Gene3D - 30 162 - -
Seca5g04232 687 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 266 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04232 Seca-Chr5 99784399 99788235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04232 64 687 Response Regulator Gene Family AT3G16857 49.774 2.43e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca5g04232 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04232 - K14491 gmx:100809583 1002.66