Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04231 ATGTTAAGCGAGTTTTACAAAGAAAATAACGAGTCTCTTCCTCAGGATATTCTCAACATGGATCGAAAGTCATTGATTGATCAAGTGAGAAACTACTTGCAGCAAAATAGGTACATTGTTGTGTTTGATGATGTATGGAACCAAAGCTTTTTGGATGGGATTGAACATGTTGTACTTGATAATAAGAATGGAAGTAGGATATTGATCACTACCAGGAACATGGAGGTTGCGGTGTTATCTAGGAAAAAATCTATTGTGGAAGAAGAATCAAGCAGCAGTACACAAAAACCTATAACTGGGGAAATGATCCAAACCCATTTTAGTGACCTAATGATTGAGCTCTACATCCAAAGATGGATTATCAGGAGGCAAAATGATCCTGGGGAACTTGAGGAGCGCAAGCTTAGTGAAGCTAAAACACAGGGTCGTCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAACCTTGTTGCATTGCTTGGATATTGCTCATTGGGTGAAGAGAAACTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAAGAGAACTGGGGCCTTGAAGAGAAACTCTGCTTATGCTTGGAGTAACATGGAGGGAAATCATGCTGCAGCAGTGGGTGGGTTGTTGGTGGTGGTGAGAGTGTAG 678 0.4115 MLSEFYKENNESLPQDILNMDRKSLIDQVRNYLQQNRYIVVFDDVWNQSFLDGIEHVVLDNKNGSRILITTRNMEVAVLSRKKSIVEEESSSSTQKPITGEMIQTHFSDLMIELYIQRWIIRRQNDPGELEERKLSEAKTQGRREFMAEMETLGKVKHQNLVALLGYCSLGEEKLLVYEYMVNGSLDLWLRKRTGALKRNSAYAWSNMEGNHAAAVGGLLVVVRV. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04231 225 Gene3D Phosphorylase Kinase; domain 1 125 181 - -
Seca5g04231 225 Gene3D - 2 88 IPR027417 -
Seca5g04231 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 81 IPR027417 -
Seca5g04231 225 Pfam Protein tyrosine and serine/threonine kinase 137 199 IPR001245 GO:0004672|GO:0006468
Seca5g04231 225 Pfam NB-ARC domain 15 82 IPR002182 GO:0043531
Seca5g04231 225 SUPERFAMILY Protein kinase-like (PK-like) 139 196 IPR011009 -
Seca5g04231 225 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 134 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04231 Seca-Chr5 99777791 99779452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04231 127 198 Receptor kinase-like Gene Family AT5G07280 78.378 4.52e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca5g04231 PK_Tyr_Ser-Thr 7.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04231 - - gmx:100780446 126.716