Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04220 ATGGGACAAGAATCAGATTCCAAAACCCAGTTGGTATTGAAGATTTGTTCCATTTCCACCCGTTCAGTTGTATGTATTCATAAACTTGTCTCAAACCCATCTAAGGCACCTTTCATTGATTGGTATTGCATTCTTGGAGTAGAAGAAAATGCAGGGGTAAATACCATTCGCAAGCAATACCATAAACTTGCCTTGCAACTTCATCCTGACAAGAATAAACACCCCAAGGCTGAAATTGCATTCAAGCTTGTCTCTGAGGCATATACATGCTTATCTGATGCTGCAAAAAGAAAAGCTTTTGACTTGGAGAGATATAAGAGGTTCTGTGTTGAATGCAATAGAATCCCTTATACACCAAGCATTGTCCCTAGCAATTCCAATGGTTCAAGTTTCAAGGCATGGAATATTATCAGCAGGTCAATATCTAGTAAAGTTAGGAGAAATATTAGGGACATGAGAGAAAGATTGAAGGAGGAAGCTAAGGTGATAGAGAACTGTCTGCGGGCAAATTCAATGTCAAAGAAAGAATCTTCCCTCTACAATGGAAGCAGGTTCCAGCATAGAGTTGAGAAAGAAACCCCTGTTTTCAATCCATCAAACTACTCACCTAAAGGATACCCTCATCCTAGAGGCCATGTTTACAAGAATTCTGAGACATGTTGGTACTTGGAGGTAGAAAATATAGTCCATAATGACAAGAGAGAAGCTAAGTATGCCTCTCCGGTTTTTGAGGTCAAATCACAAAGGAGTATGCACACAAGCAAATTTGCTTATGTCTCATCACAATGTTGA 792 0.3939 MGQESDSKTQLVLKICSISTRSVVCIHKLVSNPSKAPFIDWYCILGVEENAGVNTIRKQYHKLALQLHPDKNKHPKAEIAFKLVSEAYTCLSDAAKRKAFDLERYKRFCVECNRIPYTPSIVPSNSNGSSFKAWNIISRSISSKVRRNIRDMRERLKEEAKVIENCLRANSMSKKESSLYNGSRFQHRVEKETPVFNPSNYSPKGYPHPRGHVYKNSETCWYLEVENIVHNDKREAKYASPVFEVKSQRSMHTSKFAYVSSQC. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04220 263 Pfam DnaJ domain 40 101 IPR001623 -
Seca5g04220 263 SUPERFAMILY Chaperone J-domain 31 104 IPR036869 -
Seca5g04220 263 Gene3D DnaJ domain 39 158 IPR036869 -
Seca5g04220 263 PRINTS DnaJ domain signature 60 75 IPR001623 -
Seca5g04220 263 PRINTS DnaJ domain signature 42 60 IPR001623 -
Seca5g04220 263 PRINTS DnaJ domain signature 76 96 IPR001623 -
Seca5g04220 263 SMART dnaj_3 39 96 IPR001623 -
Seca5g04220 263 CDD DnaJ 40 93 IPR001623 -
Seca5g04220 263 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Seca5g04220 263 PANTHER BNAC03G44070D PROTEIN 21 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04220 Seca-Chr5 99685880 99686989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04220 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.455 8.71e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04220 - - gmx:100778573 403.29