Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04219 ATGGAGGCTATCTACTATCTACCATTCACTGATTTCAATCCTCTCCCTTTTCCCCCAAAACTCTGCTTCGTTACTCCTAACTCCTTAACATTTACCTCAACGCCATCCTTTGTTTTGCAACAACATCACAGTCACAGACCCACCAATGTGCGTTACCCTCTTGTATGCACAAACGCTTCTTCTTCTGCCTCTTCGCATCCACGCTCCTTTGCGGAGTCCTACCTCATCAACAATCTTGGCTTCTCACCCGATTCTGCTCTCGTAGCTTCCAAGGAAGCTCGTTTCAACACCTCCCATAAGCCTGATGCAGTTGTGGATTTGTTCATAAAATGGGGTTTCTCAAACCCCCACTTGCATCACATCATTACAAAGGAACCATGGGTGCTATCTTGCAACCCCCACAGAAGGGTTCTGCCCAAGTTTCAATTTTTACTCTCCAAAGGTGCTTCTGCCTCCGACATTGTCTTCATGGTAACCAAGACACCCAGGATCCTCCGTCGCAGCCTCGAGAATCATATTATCCCCACATATGAATTGTTACATACATTTTTGCAATCTGATAAGGAGACCTTGGCTTGCATAATTCGTAACACGCTTTCCTTTTGTAATAGTCGGATGAGACCTAATATCAAGTTGTTGATTGATTGTGGAGTTTCTGATTCAAACATTGTCTTATTGCTTCGTAAATGGCCTAGTGTATTCTCCTCCTCTAAATTGCTCAATGAGGTGGAAGAAATAAAGGAATTGGGGTTTAACCCTTCAAAATCAGCTTTTAGTGTAGCATTGCTTGCCAAACTTACTGTTAGAAAACCCCACTGGGATGAGAAAGTTGATGCCTTTAAGAAGTGGGGGTGGTCTGATGAAACCATTCTTGAAGCATTTAGGAGGCAGCCTAACTGTATGTTAGCATCCTGTGATAAAATTAATGCTGTGATGGGATTTTGGGTCCATGAGTTGGGTTGGGATGCTCGGGCCCTTGTCAAAGGAACAAATATTTTTGGATTTAGTTTGAAGAAGAGGATTATTCCAAGGGCTTTTGTTGTCCAGTATCTACTAGCAAAAGGTTTGATAGACGAGAATGCTAGCTTATTTACACCATTTATAATTTCTGAGAAGATGTTCCTGCAGAAGTTTGTGAAATGTTTTAAGGAGAATGAAACATCTCACCTATTAAAGCTATATCAGGAAAAAATGAATCTTCAAGATCTTGAAGATAATAGGGAGGAGGAAGACCGTAGCATCCAGCAGTTATCAAAGGGTTAA 1263 0.4181 MEAIYYLPFTDFNPLPFPPKLCFVTPNSLTFTSTPSFVLQQHHSHRPTNVRYPLVCTNASSSASSHPRSFAESYLINNLGFSPDSALVASKEARFNTSHKPDAVVDLFIKWGFSNPHLHHIITKEPWVLSCNPHRRVLPKFQFLLSKGASASDIVFMVTKTPRILRRSLENHIIPTYELLHTFLQSDKETLACIIRNTLSFCNSRMRPNIKLLIDCGVSDSNIVLLLRKWPSVFSSSKLLNEVEEIKELGFNPSKSAFSVALLAKLTVRKPHWDEKVDAFKKWGWSDETILEAFRRQPNCMLASCDKINAVMGFWVHELGWDARALVKGTNIFGFSLKKRIIPRAFVVQYLLAKGLIDENASLFTPFIISEKMFLQKFVKCFKENETSHLLKLYQEKMNLQDLEDNREEEDRSIQQLSKG. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04219 420 Pfam mTERF 106 214 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 Pfam mTERF 204 374 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 Gene3D Transcription termination factor 3, mitochondrial 187 387 IPR038538 -
Seca5g04219 420 FunFam Mitochondrial transcription termination factor-like 169 385 - -
Seca5g04219 420 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 SMART mt_12 224 252 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 SMART mt_12 191 219 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Seca5g04219 420 Coils Coil 400 420 - -
Seca5g04219 420 PANTHER CGI-12 PROTEIN-RELATED 69 383 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04219 Seca-Chr5 99679340 99680602 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g04219 mTERF 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04219 K15032 - mtr:25488156 376.711