Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca5g04215
ATGCCGCCACTCCTACCTCCAAAGATTCATCACCTGTCCAATTTGATGAAATCCCAGGCAATAAAGGTGGTAGCATGTGACAAAGCGGAGAAGAAAAAAGGCGTGGCTGCAGGGAAGAAGAGTGGTGAGAAGAGTCAGCGAGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCGGCAGAGATAAGGGACCCACACAAAGGTGTTCGTGTCTGGCTCGGCACTTTCCCCACCGCTGAAGAAGCCGCCAGAGCCTACGATGAAGCCGCTAAGCGCATCCGCGGTGACAAGGCCAAGCTCAATTTCCCTACCACCACCGCCACTACTCCTCCGTCTCCGTCCCCACCACCGGAGGAGCACCTTTCCAAAAAGCGGTGTCTCAGCCCTGATCAGACCAGCTCTCAGGCCAGCTCTGACTCCGCCGGGTCTGAAGAGCTCGATCTGAAGGAGCAAATCTCCAACCTTGAATGGTTTCTGGGCCTGGAGCAAGAGCCTCCTCAAGCCCAGGCCCAGCCTGAGCCCGAACTCATGCCCGTTCCGGGTGGTGCTGACTGGGACAACAACTACATGGACCTGTGGACACTTGACGACGTCGTTATGCCTAACCGTCACCTGATTTATTAA
642
0.5607
MPPLLPPKIHHLSNLMKSQAIKVVACDKAEKKKGVAAGKKSGEKSQRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPTTTATTPPSPSPPPEEHLSKKRCLSPDQTSSQASSDSAGSEELDLKEQISNLEWFLGLEQEPPQAQAQPEPELMPVPGGADWDNNYMDLWTLDDVVMPNRHLIY.
214
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca5g04215
213
PRINTS
Ethylene responsive element binding protein signature
53
64
IPR001471
GO:0003700|GO:0006355
Seca5g04215
213
PRINTS
Ethylene responsive element binding protein signature
75
91
IPR001471
GO:0003700|GO:0006355
Seca5g04215
213
CDD
AP2
53
108
IPR001471
GO:0003700|GO:0006355
Seca5g04215
213
PANTHER
DNA-BINDING DOMAIN
39
151
IPR044808
GO:0003700|GO:0009873
Seca5g04215
213
ProSiteProfiles
AP2/ERF domain profile.
52
109
IPR001471
GO:0003700|GO:0006355
Seca5g04215
213
MobiDBLite
consensus disorder prediction
102
153
-
-
Seca5g04215
213
MobiDBLite
consensus disorder prediction
31
50
-
-
Seca5g04215
213
Gene3D
AP2/ERF domain
52
111
IPR036955
GO:0003700|GO:0006355
Seca5g04215
213
FunFam
Ethylene-responsive transcription factor 2
51
110
-
-
Seca5g04215
213
SUPERFAMILY
DNA-binding domain
52
110
IPR016177
GO:0003677
Showing 1 to 10 of 14 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Seca5g04215
Seca-Chr5
99593516
99595844
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca5g04215
46
205
AP2-EREBP Transcription Factor Family
AT3G16770
47.090
3.20e-39
133
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
AP2 or ERF-ERF
Seca5g04215
AP2
1.3e-15
CL0081
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca5g04215
K09286
-
gmx:100817253
186.037
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows