Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04215 ATGCCGCCACTCCTACCTCCAAAGATTCATCACCTGTCCAATTTGATGAAATCCCAGGCAATAAAGGTGGTAGCATGTGACAAAGCGGAGAAGAAAAAAGGCGTGGCTGCAGGGAAGAAGAGTGGTGAGAAGAGTCAGCGAGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCGGCAGAGATAAGGGACCCACACAAAGGTGTTCGTGTCTGGCTCGGCACTTTCCCCACCGCTGAAGAAGCCGCCAGAGCCTACGATGAAGCCGCTAAGCGCATCCGCGGTGACAAGGCCAAGCTCAATTTCCCTACCACCACCGCCACTACTCCTCCGTCTCCGTCCCCACCACCGGAGGAGCACCTTTCCAAAAAGCGGTGTCTCAGCCCTGATCAGACCAGCTCTCAGGCCAGCTCTGACTCCGCCGGGTCTGAAGAGCTCGATCTGAAGGAGCAAATCTCCAACCTTGAATGGTTTCTGGGCCTGGAGCAAGAGCCTCCTCAAGCCCAGGCCCAGCCTGAGCCCGAACTCATGCCCGTTCCGGGTGGTGCTGACTGGGACAACAACTACATGGACCTGTGGACACTTGACGACGTCGTTATGCCTAACCGTCACCTGATTTATTAA 642 0.5607 MPPLLPPKIHHLSNLMKSQAIKVVACDKAEKKKGVAAGKKSGEKSQRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPTTTATTPPSPSPPPEEHLSKKRCLSPDQTSSQASSDSAGSEELDLKEQISNLEWFLGLEQEPPQAQAQPEPELMPVPGGADWDNNYMDLWTLDDVVMPNRHLIY. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04215 213 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Seca5g04215 213 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Seca5g04215 213 CDD AP2 53 108 IPR001471 GO:0003700|GO:0006355
Seca5g04215 213 PANTHER DNA-BINDING DOMAIN 39 151 IPR044808 GO:0003700|GO:0009873
Seca5g04215 213 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Seca5g04215 213 MobiDBLite consensus disorder prediction 102 153 - -
Seca5g04215 213 MobiDBLite consensus disorder prediction 31 50 - -
Seca5g04215 213 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Seca5g04215 213 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Seca5g04215 213 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Seca5g04215 213 MobiDBLite consensus disorder prediction 167 188 - -
Seca5g04215 213 MobiDBLite consensus disorder prediction 133 148 - -
Seca5g04215 213 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Seca5g04215 213 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04215 Seca-Chr5 99593516 99595844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04215 46 205 AP2-EREBP Transcription Factor Family AT3G16770 47.090 3.20e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g04215 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04215 K09286 - gmx:100817253 186.037