Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04205 ATGCTCACCGCCATCATCCTTCTCTTCTTCGTCGTCGTTTTGATGCTTTGCCTTCATATTTACGCCCGATGGTACCTCCTCCGCGCTCGCCGCCGCCACCTACGCCGCAACCGCCTCCGCCGTCGCACTCAGCTCATCTTCTACACTGACTCCGACAACCCCACCACCGTCATCGCCGCCTCTCGCGGCCTTGAAGCATCCGTCATCGCCTCACTCCCCGTCTTCTTCTACGACCCCAAGACCCACCCGGAAAATCCACCGGAATGTGCGGTTTGCTTGTCTGAGTTCGAATCGGGCGAAACGGGTCGGGTCTTACCCAAGTGTAACCACACATTTCACACTGACTGCATCGACATGTGGTTCCACTCCCACTCTACATGCCCTCTCTGCCGCGCCCCGGTGGAACCCGAGATCCAGACCCGACCCGAAGTGGTTATAACAGTTCGTGAAACGGAATCCGGTTCAAGTTCCGGGCCGTGCTTGGAAGATGAGAACCGAATCAGCAAGGAGGTTTGTTCGTCGTCGATTGGGATGAGGAGGAAGCCGTCGTTTGTTGGTGTGACCGTTGAGATGCCGTCGAGGAACGAGAGTTTCCGGGACGAGTTGGGATGCTGCGACTCGCCGTCAACTCAGTCATCGTTCCGGTCGCCGATGAGTCGCATGCTGTCGTTCAAGAGAATCCTTAGCAGGGAACGGAAGGGAAGCGTTTCCCCGTCGTCGTGTGGTGGTTGCAGCTCCGCGAACGAGTTGAACGCGGAGCGAGGTGGGCGAGACGAGACTCAGTGA 786 0.5802 MLTAIILLFFVVVLMLCLHIYARWYLLRARRRHLRRNRLRRRTQLIFYTDSDNPTTVIAASRGLEASVIASLPVFFYDPKTHPENPPECAVCLSEFESGETGRVLPKCNHTFHTDCIDMWFHSHSTCPLCRAPVEPEIQTRPEVVITVRETESGSSSGPCLEDENRISKEVCSSSIGMRRKPSFVGVTVEMPSRNESFRDELGCCDSPSTQSSFRSPMSRMLSFKRILSRERKGSVSPSSCGGCSSANELNAERGGRDETQ. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04205 261 FunFam RING-H2 finger protein ATL3 55 136 - -
Seca5g04205 261 MobiDBLite consensus disorder prediction 230 261 - -
Seca5g04205 261 CDD RING-H2_EL5-like 88 131 - -
Seca5g04205 261 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 135 IPR044675 -
Seca5g04205 261 SMART ring_2 89 130 IPR001841 -
Seca5g04205 261 Pfam Ring finger domain 88 131 IPR001841 -
Seca5g04205 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 140 IPR013083 -
Seca5g04205 261 MobiDBLite consensus disorder prediction 233 247 - -
Seca5g04205 261 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Seca5g04205 261 SUPERFAMILY RING/U-box 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04205 Seca-Chr5 99489055 99489840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04205 1 258 Rapid Response to Elicitors AT3G16720 51.786 7.00e-68 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04205 - - lja:Lj6g3v1468220.1 305.449