LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04182	ATGGTTGATGGGAGAAGATTTACGAAGGCACAAATTTGCTCGGTGATAGGGGCTTGGTCTCAGCCTTGGGCGGAACGCGTTTGGCGAGGAAATGCGAGTTTCTTTGAAGGTAATTCAAATTTCAAACTACATTTAGGAGGGATTTTGTTAATTGTTAATGAAATTGGATTTAAACATTTTGTTTACAAACATGTTCATTTGGGGAAATCTATAAATACATGCTTTGGGTTGGTTGATAGACATTACTGTCTTCACCTGAACTTTCTGAGTGATTATTTCCACCAATTAACAATGGCTATGGTTAATTCACATTTCCATTCCATAAAATCTCCGTATGGTCTTCAACAAAATTGGAGGTTGAGGGTGAAATTGGTTAGGGTGTGGAACATGGCCTCCATCGCTACTCCAAATGACCCATTTGCTACCCAAATGGTTATGATTGATGAAGAGGGTGGAAGAATTGAAGCCACCGTACCCAAACAACATATGAACAAGTTCTCTCACTCTCTCATTGAGGGACAGATTTATAGGATCACCAATTTCGGAATCCTGAAAAATAATGGAAAGTTCAGAGCAGTTGTTCACGAGTTTAAGATCATATTCAATGCCACTACCAGGCTATTTCCGTGCCAGAATGTTTCCATCTTATCACCTGGGTTTGCACTTTTGAAGAGTGAGGCGATAAAGAAAACTAATGGCCGATCTGAATACCTTTTAGATTTCATGGGCATCGTCACTGCCGTTTCAGAGGAAATCAACTTGAGCAAGGAGGGCAGGGAGACACGAATGATGCTAATTGATTTAGTGGATGAGATGTATGGTTTTCTGAGTCCATTGCGTTAA	843	0.4021	MVDGRRFTKAQICSVIGAWSQPWAERVWRGNASFFEGNSNFKLHLGGILLIVNEIGFKHFVYKHVHLGKSINTCFGLVDRHYCLHLNFLSDYFHQLTMAMVNSHFHSIKSPYGLQQNWRLRVKLVRVWNMASIATPNDPFATQMVMIDEEGGRIEATVPKQHMNKFSHSLIEGQIYRITNFGILKNNGKFRAVVHEFKIIFNATTRLFPCQNVSILSPGFALLKSEAIKKTNGRSEYLLDFMGIVTAVSEEINLSKEGRETRMMLIDLVDEMYGFLSPLR.	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04182	280	Gene3D	-	105	212	IPR012340	-
	Seca5g04182	280	SUPERFAMILY	Nucleic acid-binding proteins	104	214	IPR012340	-
	Seca5g04182	280	CDD	RPA1_DBD_A_like	119	206	-	-
	Seca5g04182	280	Pfam	Domain of unknown function DUF223	144	214	IPR003871	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04182	Seca-Chr5	99312047	99313292	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04182	146	271	Core DNA Replication Machinery Family	AT2G06510	26.357	5.74e-06	45.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04182	-		-	lja:Lj0g3v0341019.1	148.673