Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04175 ATGATTTCTTCTTTTTTGAACATGTCTCCTCCTTCTTGGCTCATATCCCCTTCATGTTCCTCTTTAACCATAGATTCATCTTCCACCACTGCAAAACTCATAGTTCAATGGTTAAGGTTCCTCCTCCTATCTCCATGTCCTCAAAGAGCTCTTATTTCTGCACTTGACATTCTCTTCTTGCTCATCTTCCTAGCCTTTGCAGCTCACAAACTCTATTCTCGATTCAGTTCCAATCCTAACTCTACCTCCTCCATCACTAAACCACTTCTTCAGGAGAAAGACTCTGACTTTAGAGTTACCTTCTGGTTCAAACTACCCTTGTTGGTAACCGCCCTTTTGGCTATAGCTTACACGGTTCTTAGTGTCTTGGCTTTCACTGAAAGCAACCTTGCATCATGGATACAGATAGAGGCACTGTTCAGGATATGCCAAGCAATAGCAAACACAGTGATTGTGATTCTATTGGTACACGAGAAGAAATTCAAGGCTACCAAGCACCCTTTGTCATTGAGAGTGTATTGGATAGCAAACTTTGTGATTGCTTGGTTGTTTGCTGTTTCAGCCATTGTTCGCCTTGTAGCTGTTAATGATGTGAGGTTGGATGCTAATTTGAGAATAGATGACATATTCTCATTGGTTAATCTTCCATTATCTGTGTTCTTTTTGATAATAGCCATGAAAGGTTTATCAGGGATTCATGTGATCAGAATAACTGATGTAGTAGTAACACCATATAATTGGCTTTCCACAGATGGGACTTTGAGTTTGAGTCCTTATGCTTATGCTTCATCTTTGTCCAAAACAGTTTGGCTTTGGATGAACCCTTTACTTGTTAAGGGGTACACAACACCTCTTAAATTGGAAGATGTACCATCACTTCCTCCTGATTTCAGAGCAGAAAAGATGTCAGAGCTTTTTCAGATCAATTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCAGTTGGGCTTACCTTGTTTAGGAGCTTTTGGAAACACATAGCTTTCACTGGCTTCCTTGCAATCATTAGGCTTGCAGTTATGTACATTGGTCCAATGCTTATCAATAGTTTTGTTGACTACTCCTCAAGGACAGATAACTCTCCCACTGATGGTCTTGTTTTGATAGGAGTACTTTTTGCAGCAAAAGCAATTGAAGTCCTCAGTGTTCACCAATTCAACTTCCATTCTCAGAAACTAGGCATGTTGATTCGTTCCAGCATCATAACTTCTGTGTTCAAGAAGGGGTTGAGGTTGTCAAGTTCTTCAAGGCAAGCTCATGGGACTGGCCAGATTGTGAACCATATGGCTGTTGATGCTCAACAGCTATCAGATTTGATGTTGCAGTTCCATCCTATATGGATGATGCCATTGCAAGTTGCTGCTGCATTGGCCCTTATGTATAGTTATGTTGGTTTGTCTGTACTTGCAGCTGTGCTTGGAACTTCCATAGTGTTTCTCTTCACTCTCTTCCGCACAAAGAGGAGCAACAGTTTCCAGTTTCGTATAATGACTAGCCGTGACTTGAGGATGAAAGCAACCAATGAGTTGCTTAACAACATGCGTGTCATTAAGTTCCAAGCTTGGGAGGAGTATTTTGGTAACAAGATTAAGCAGTTTCGTGAAGCTGAGCATGGTTGGATTGGCAAGTTCTTGTACTATTTTGCTGTTAACATGGGAGTTCTGTCCACTGCTCCACTCACTGTAACTGTTCTTACCTTTGGAACTGCAACTTTCTTAGGCATTCGTTTGAATGCTGGCACTGTGTTCACAATAACTTCAGTGATCAAGATATTGCAAGAGCCTGTGAGGACTTTCCCACAGGCTCTTATCTTGATTTCTCAAGCATTAATCTCCCTGGGGAGGTTGGATGAGTTCATGAACAGTAAGGAAATGGATGAGAGTGCAGTGCAGAGAGAGGACAGCAGTGACAATGACATAGCTGTGGAGATAAAAGATGGGAAATTCTCTTGGGATGATGAGGATGGGAATGAGGCTTTGAGAGTTGAAGACTTGGAAATTAAGAAAGGGGACCATGCTGCAATTGTAGGAACTGTTGGGTCAGGCAAGTCTTCCTTATTGGCTTCTGTGTTAGGGGAAATGTTCAAGATCTCAGGAAAGGTCAGAGTTTGTGGGACGATTGCCTATGTAGCACAGACATCATGGATTCAGAATGCAACCATCCAACAAAACATATTGTTTGGTCTACCAATGAACAGGGATAAGTACAGGGAAGCTGTAAGGGTGTGCTGCCTAGACAAGGATCTTGAAATGATGGAACATGGAGACCAGACTGAGATTGGAGAACGAGGTATTAACCTCAGTGGTGGCCAAAAGCAACGTGTACAACTTGCTAGAGCTGTATACCAGGACTGTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCCCAAACAGGATCATTTATTTTTAAGGAATGTATCATGGGAGCTCTCAAAAACAAGACCATTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTGATGAGAGATGGGAGAATAGTGCAAAAAGGGAAGTATGATGAACTTCTCAAAGCTGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATAGTAGAATCAAGTGACAAAGGTGGTGATGATTCTGGTCAGTCTCCAAAATTGGCTCGTATCCCTTCAAAAGAAAAGGAAAGCATAGGTGAAAAGCCTACTCAGGATCAATCTAAGTCTGACAAGGCTACAGCAAAGCTCATTGAAGATGAGGAGAGAGAAACTGGCCGTGTGGACCTTAAAGTATACAAACATTATTTCACTGAAGCATTTGGATGGTGGGGAGTAGTACTCATGGTGGCTATGTCTATGGCATGGATTGTATCTTTCTTGGCTGGTGACTACTGGCTAGCAATTGCAACTGCAGAAGATTCTAGAATTCCTTCAAATACATTCATTATTGTCTATGCTATCATAGCAGCTGTTGCATGTATAGTGGTGATGATCAGGGCAATCTTATTTACATATTGGGGTCTAAAGACTTCTCAAAGCTTCTTCATTGGAATGCTTAATAGTATCCTGCATGCACCAATGTCATTCTTTGACACCACTCCTTCTGGCAGAATTTTGAGTCGTGTATCTACTGATATACTTTGGGTTGATATATCAATTCCAATGTTAATAGGCTTCATGATGATTGCTTACTTCTCACTAATCAGTGTCCTCGTTGTCACATGTCAAAATGCTTGGGAGACTGTCTTCCTCATAATTCCACTGTTTTGGCTAAATAATTGGTATCGGAAATATTACCTTGCAACTTCTCGGGAATTGACTCGCCTTGATTCTATCACAAAAGCTCCTGTGATTCATCACTTTTCAGAGACCATTTCTGGTGTCATGACAATCCGTGGCTTCAGAAAGCAGAATGCATTTTCTGAGGAAAATATTGAAAGGGTCAATGCAAGTCTCAGAATGGATTTCCACAACAATGGAGCGAATGAATGGCTTGGTTTTCGCCTGGACTTTATGGGAGTGATTTTTCTTTGCGTTTCCACCATTTTTATGATCTTTTTGCCAAGTTCTGTTGTTAGGCCAGAATATGTTGGTTTGTCTCTATCCTATGGCCTGGCTCTCAGTGGTCTCTTAGCAGTTACCATAACTATGACCTGCACTGTTGAGAACAAAATGGTTGCAGTTGAGAGGATCAAGCAGTTTACCAACCTTCCATCAGAAGCTCCATGGAAGATCCCAGATAGGACTCCTCCTCAGAATTGGCCAAGTCATGGCAGTATCGAGTTAAATAATTTGCAGGTTCGGTATCGGCCAAATACTCCTCTAGTTCTTAAGGGAATTTCTCTCACTATCCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGTACAGGGAGTGGGAAATCAACCCTCATCCAGGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATTATAGATGGGATCAACATTTGCACCATTGGACTTCATGATGTGAGGTCGAGATTTGGAATTATTCCACAAGAGCCTGTCCTCTTTCAAGGAACAGTAAGAAGCAACATTGACCCTCTTGGATTGTATTCTGAAGAAGAAATTTGGAAGAGCCTTGAGCGCTGCCAACTGAAAGATGTGGTAGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGGCAAAGGCAGCTATTGTGTTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTATTCATGGATGAAGCAACAGCATCTGTTGACTCACAAACTGATGCTGTAATACAAAAGATCATTCGGGAAGACTTTGCAGACCGTACAATTATCAGTATTGCTCACAGAATACCAACAGTCATGGATTGTGACAGGGTTATGGTGATTGATGCAGGCTTTGCAAAGGAATTTGACAAGCCATCACGTTTGCTAGAAAGGCCTTCAATTTTTGGGGCATTGGTTAAAGAGTACTCTAATAGATCAGCTTAA 4527 0.4177 MISSFLNMSPPSWLISPSCSSLTIDSSSTTAKLIVQWLRFLLLSPCPQRALISALDILFLLIFLAFAAHKLYSRFSSNPNSTSSITKPLLQEKDSDFRVTFWFKLPLLVTALLAIAYTVLSVLAFTESNLASWIQIEALFRICQAIANTVIVILLVHEKKFKATKHPLSLRVYWIANFVIAWLFAVSAIVRLVAVNDVRLDANLRIDDIFSLVNLPLSVFFLIIAMKGLSGIHVIRITDVVVTPYNWLSTDGTLSLSPYAYASSLSKTVWLWMNPLLVKGYTTPLKLEDVPSLPPDFRAEKMSELFQINWPKPEENSKHPVGLTLFRSFWKHIAFTGFLAIIRLAVMYIGPMLINSFVDYSSRTDNSPTDGLVLIGVLFAAKAIEVLSVHQFNFHSQKLGMLIRSSIITSVFKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMLQFHPIWMMPLQVAAALALMYSYVGLSVLAAVLGTSIVFLFTLFRTKRSNSFQFRIMTSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIKQFREAEHGWIGKFLYYFAVNMGVLSTAPLTVTVLTFGTATFLGIRLNAGTVFTITSVIKILQEPVRTFPQALILISQALISLGRLDEFMNSKEMDESAVQREDSSDNDIAVEIKDGKFSWDDEDGNEALRVEDLEIKKGDHAAIVGTVGSGKSSLLASVLGEMFKISGKVRVCGTIAYVAQTSWIQNATIQQNILFGLPMNRDKYREAVRVCCLDKDLEMMEHGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDVFSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDSIMVMRDGRIVQKGKYDELLKAGLDFGALVAAHESSMEIVESSDKGGDDSGQSPKLARIPSKEKESIGEKPTQDQSKSDKATAKLIEDEERETGRVDLKVYKHYFTEAFGWWGVVLMVAMSMAWIVSFLAGDYWLAIATAEDSRIPSNTFIIVYAIIAAVACIVVMIRAILFTYWGLKTSQSFFIGMLNSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLIGFMMIAYFSLISVLVVTCQNAWETVFLIIPLFWLNNWYRKYYLATSRELTRLDSITKAPVIHHFSETISGVMTIRGFRKQNAFSEENIERVNASLRMDFHNNGANEWLGFRLDFMGVIFLCVSTIFMIFLPSSVVRPEYVGLSLSYGLALSGLLAVTITMTCTVENKMVAVERIKQFTNLPSEAPWKIPDRTPPQNWPSHGSIELNNLQVRYRPNTPLVLKGISLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICTIGLHDVRSRFGIIPQEPVLFQGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDRVMVIDAGFAKEFDKPSRLLERPSIFGALVKEYSNRSA. 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04175 1508 Pfam ABC transporter 1285 1433 IPR003439 GO:0005524
Seca5g04175 1508 CDD ABC_6TM_ABCC_D2 949 1243 IPR044726 GO:0140359
Seca5g04175 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 867 IPR027417 -
Seca5g04175 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1268 1502 IPR003439 GO:0005524
Seca5g04175 1508 FunFam ABC transporter C family member 10 317 630 - -
Seca5g04175 1508 SUPERFAMILY ABC transporter transmembrane region 950 1254 IPR036640 GO:0005524|GO:0016020
Seca5g04175 1508 CDD ABCC_MRP_domain1 648 848 - -
Seca5g04175 1508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1501 IPR027417 -
Seca5g04175 1508 FunFam ABC transporter C family member 4 631 889 - -
Seca5g04175 1508 FunFam ABC transporter C family member 3 1251 1502 - -
Seca5g04175 1508 SUPERFAMILY ABC transporter transmembrane region 323 632 IPR036640 GO:0005524|GO:0016020
Seca5g04175 1508 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 261 1504 - -
Seca5g04175 1508 CDD ABCC_MRP_domain2 1266 1486 - -
Seca5g04175 1508 MobiDBLite consensus disorder prediction 897 925 - -
Seca5g04175 1508 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 648 871 IPR003439 GO:0005524
Seca5g04175 1508 ProSitePatterns ABC transporters family signature. 773 787 IPR017871 GO:0005524|GO:0016887
Seca5g04175 1508 Gene3D ABC transporter type 1, transmembrane domain 915 1249 IPR036640 GO:0005524|GO:0016020
Seca5g04175 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 334 614 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04175 1508 Pfam ABC transporter 670 799 IPR003439 GO:0005524
Seca5g04175 1508 Pfam ABC transporter transmembrane region 335 602 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04175 1508 Pfam ABC transporter transmembrane region 972 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g04175 1508 SMART AAA_5 675 856 IPR003593 GO:0016887
Seca5g04175 1508 SMART AAA_5 1294 1478 IPR003593 GO:0016887
Seca5g04175 1508 CDD ABC_6TM_ABCC_D1 335 622 IPR044746 GO:0140359
Seca5g04175 1508 MobiDBLite consensus disorder prediction 879 925 - -
Seca5g04175 1508 Gene3D - 1252 1500 IPR027417 -
Seca5g04175 1508 FunFam ABC transporter C family member 5 916 1249 - -
Seca5g04175 1508 Gene3D - 642 874 IPR027417 -
Seca5g04175 1508 Gene3D ABC transporter type 1, transmembrane domain 323 630 IPR036640 GO:0005524|GO:0016020
Seca5g04175 1508 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1231 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04175 Seca-Chr5 99248322 99256229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04175 648 910 Calmodulin-binding Proteins AT2G36910 29.021 1.19e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04175 - K05665 gmx:100780167 2456.02