Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04172 ATGGAGGATTCAGGGCTGCAGAAGCAAAAGCAGCGAGAGTTTGATTTGGCATGGGTGGGTGAGTTGTCTTCGGCTCGTTCTGCTGCTTCGCCAGGGGTGGCTCGCTTCTCTGTCGACCGTCTACAAATTCAGCTTGAATCTAAGCAAACTGTTTTCAACGTTGATCTTCCAGCTGCTCAGCTATTCAGATTAGGTCCTGTTCAATCGTTTTGCATGGCTGAAGGGTCTGATGCTGGCAAACAGACATCATATTCCAGGGGAGTCGCTATACTGTTTAGAAATGAGGAAGAGAGTGAGACCTTCCATTGTGTATTGCAACAATGGAAGAAGGAATTCAATGTTCAAGGAGGAAACTTACCAAATGGAGCTAATGTAATAACTTCTAAAAGCAAATTTGACGAAAAGATAGAGCCATCTTCTGCAAAAATGTATTTTCATTATTATGGCCAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACATATTATGCTGCTGTTATTGAGAATCGCGCTGATTTCTTTGGTCGTGTAGTAGTAGATGTTGGTGCTGGTAGTGGTATTTTATCATTATTTGCTGCTCAGGCAGGTGCAAAACATGTTTATGCCGTAGAAGCATCTGAAATGGCAGAATACGCACGGAAACTTATAGCTGGGAACCCAATACTGGGTCAACGAATTACTGTTATTAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAAAAAGCAGATATTCTGATCTCTGAGCCCATGGGAACCTTGTTAGTTAATGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACCCCTAATGGGAAAATGTTTCCTACAGTGGGAAGGATTCACATGGCACCTTTCAGCGATGAATATTTGTTTGTTGAAATTGCTAATAAGGCCTTGTTCTGGCAGCAGCAAAACTATTATGGTGTTGATTTGACACCCTTACACGGGACTGCCTTTCAAGGATACTTTTCTCAGCCCGTGGTAGATGCTTTTGATCCAAGGTTGTTAATAGCTCCTCCTATGTTCCATGTGCTAGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAGATTGACATTCCTCTCAGATTTATATCGAATGTGGGTGCCAGAGTACATGGGTTGGCATGTTGGTTTGATGTACTGTTCAATGGAAGTACTGTGCGAAGGTGGCTTACCACAGCCCCTGGTTCACCAATAACTCATTGGTATCAGTTACGCTGTGTTCTCTCCCAGCCAATTTATGTCATGGCAGGACAAGAAATTACCGGCAGGCTGCACTTGATTGCCCACAATGCACAGAGTTATACAATCTATTTAACTTTGTCAGTAAATTTAAATTTTCATTTAGCTAAAATGTGGGGGCCTGGTGCCGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAGCTTGATCTGAAGGAACCCTACTATAGAATGTCTCAACCACAAGCTTATCCATTAAGCCAAGATCAGCAATCGCAACCACTTTTGCAGACACAGGATGTACACATCCAATCTCAGGATTTGGATGAACCTGAGATAATTCAACAGCCTTCGCCTAAGTCGTGTGCTCAGGTTGACTCACTCATGCGCAATGCATAA 1632 0.4265 MEDSGLQKQKQREFDLAWVGELSSARSAASPGVARFSVDRLQIQLESKQTVFNVDLPAAQLFRLGPVQSFCMAEGSDAGKQTSYSRGVAILFRNEEESETFHCVLQQWKKEFNVQGGNLPNGANVITSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFFGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPTVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPPMFHVLDFTKIKEEELYEIDIPLRFISNVGARVHGLACWFDVLFNGSTVRRWLTTAPGSPITHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSVNLNFHLAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLSQDQQSQPLLQTQDVHIQSQDLDEPEIIQQPSPKSCAQVDSLMRNA. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04172 543 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 137 452 IPR025799 GO:0016274|GO:0018216
Seca5g04172 543 Gene3D - 286 501 - -
Seca5g04172 543 FunFam Probable histone-arginine methyltransferase CARM1 286 501 - -
Seca5g04172 543 FunFam Probable histone-arginine methyltransferase CARM1 124 284 - -
Seca5g04172 543 Pfam Ribosomal protein L11 methyltransferase (PrmA) 181 252 - -
Seca5g04172 543 CDD AdoMet_MTases 183 286 - -
Seca5g04172 543 Gene3D Vaccinia Virus protein VP39 123 284 IPR029063 -
Seca5g04172 543 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 115 456 IPR025799 GO:0016274|GO:0018216
Seca5g04172 543 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 147 456 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04172 Seca-Chr5 99184743 99193691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04172 144 453 C2H2 Transcription Factor Family AT3G12270 32.628 9.62e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04172 K05931 - gmx:100818828 941.799