Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04168 ATGCAGAACGAGGAAGGACAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAACAGATTGATCACTGCCAAGGACCATGCCTCGGTTCAGATCAACATTGGCCATTTGGATGAGAACGGTATCTACAATGGCCACTTCTCCACCTACGCCCTTTGTGGCTTCGTTCGTGCTCAGGTCTCCATTATATTTTTTTTTCGCTATTTTTTAATCTCATTACTGTTTATCGTTCCTTGA 243 0.4444 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDENGIYNGHFSTYALCGFVRAQVSIIFFFRYFLISLLFIVP. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04168 80 Pfam Ribosomal protein S21e 1 61 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca5g04168 80 PANTHER 40S RIBOSOMAL PROTEIN S21 1 63 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca5g04168 80 Gene3D - 1 64 IPR038579 -
Seca5g04168 80 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Seca5g04168 80 FunFam 40S ribosomal protein S21 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04168 Seca-Chr5 99167869 99169500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04168 1 61 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.246 6.76e-38 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04168 K02971 - gmx:100817753 125.946