Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04167 ATGCTTAGTCCTGAAGGTGAACTTGAAATAAGTTTTGGCTATCAATGCAATAGGGGTAAAGATATCCCTTTCAAGATTGCCAATGGCTTTGAAATCTTTCCTGAAATGCGCAGAACAAGCAGTTTCTCTTGCTTGTCTGGTGCTGCCTTAAGTGCAAATGCTACACTAGCCAATACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCAAGTTTGGACTCTCCTAATTCATTTCGTAGGGTACCCTCTTCACCAAGTCTTCCAAAGTTGGACATACCTTCTCTCCATAGTAGTATGTCAAACCTAAGTTGCAGCCCATCCACTCCAAGTACTATACTTGAATATGACCCTTGTTCATTAACATCCATGAGTACTCCTTCCAGAAATGAAGGTTTTCTTAATGCTATGGAAGTACAAGTAGCAGGAGGTGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGATGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCTGATTTTCTTGCTGGTACCCTTTATGACACTTTAGTATCCTATTTTAATATGTTATATTGGTATTTGGAACCAGATTCCATCAAAGCTTCTAATAACATGAGTTTGAGTGGATCCTTTGAACATAAGTTGGATGATAATCTTATTCTTCCTAAGCATCAATCTCCATCATCAATATTTAAGGGAATCAACAATTCTAGTCCACCTGCCAAATCAGATACATCACATGAATCATTTTCACATGTGGTACTTGATAGCCTCCAACAAGTTCTTAGTCAGGTTGAGAATGATTTCTTGTGCATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTGTGTTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGGAATGATTTGTATACACTTAATCTAGGAGACAGCAGAGCAGTATTGGCAACACACAGTACTGATGACATAATGAATGGGAATGAGAGATTGAAAGCTATTCAACTTACAGATAGTCATACTGTTGACAATGAAGATGAAAAAGCTAAACTTCTTGCTAGTCATCCTAATGATCCAAAGACCATTGTAGCAGGGAAAGTGAAAGGAAAATTGAAGGTTACACGTGCTATTGGAGTTGGCTACTTGAAAAAGAAAATTCTGAATGATGCATTGATGGGAATCCTTCGAGTTAGTAATCTTATAAGCCCGCCATATATCTCAACTGATCCATCACTGAATGTGCATAAAATCTCAAGTTCTGATCAATTTGTCATAGTTGGAAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAAGCAGTACAACTTGTGGAGTCTTATATATTGAGCAATCCTTTTGGTGATCCTGCAAAATTTCTTATTGAGCAACTAGTAGCAAGGGCAGCTGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGAAGGAAGTACCATGATGATGTGACTGTAATTGTGATCATCCTTGGGATGAATCAACGGACTTCAAAGGCATCAACTTGCATCTAA 1548 0.3876 MLSPEGELEISFGYQCNRGKDIPFKIANGFEIFPEMRRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPNSFRRVPSSPSLPKLDIPSLHSSMSNLSCSPSTPSTILEYDPCSLTSMSTPSRNEGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTLVSYFNMLYWYLEPDSIKASNNMSLSGSFEHKLDDNLILPKHQSPSSIFKGINNSSPPAKSDTSHESFSHVVLDSLQQVLSQVENDFLCMVEQEMEERPDLVCVGSCVLLVLLHGNDLYTLNLGDSRAVLATHSTDDIMNGNERLKAIQLTDSHTVDNEDEKAKLLASHPNDPKTIVAGKVKGKLKVTRAIGVGYLKKKILNDALMGILRVSNLISPPYISTDPSLNVHKISSSDQFVIVGSDGLFDFFSNDEAVQLVESYILSNPFGDPAKFLIEQLVARAADSAGFSMEELMNIPAGRRRKYHDDVTVIVIILGMNQRTSKASTCI. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04167 515 Gene3D - 107 511 IPR036457 -
Seca5g04167 515 SMART PP2C_4 125 500 IPR001932 -
Seca5g04167 515 SUPERFAMILY PP2C-like 147 503 IPR036457 -
Seca5g04167 515 PANTHER PROTEIN PHOSPHATASE 2C 142 500 IPR015655 GO:0004722|GO:0006470
Seca5g04167 515 ProSiteProfiles PPM-type phosphatase domain profile. 134 502 IPR001932 -
Seca5g04167 515 Pfam Protein phosphatase 2C 267 466 IPR001932 -
Seca5g04167 515 CDD PP2Cc 147 502 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04167 Seca-Chr5 99152983 99157302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04167 4 515 PP2C-type Phosphatase Gene Family AT3G16560 63.846 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04167 - - gmx:100791404 780.4