Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04157 ATGTTGAGTTCTCAACGCTTCAAACCCCTTCTTCTTCATCATCTAAAGGGAATACCCTTTCAAACCCCAAAATTGAATCCTGTTGTGTCAACACTCTCTTTAAAACACAGCACAACCACCTCTGATCAAAACCAATTCACGCTTTCGTATCTCACAACCAATTGCGGCTTCTCACCAGAAACTGCTCGCAAGACTTCCAAGCAAGTTCGTTTCGACACCGCCGAAAAGCCCGACTCAGTCATCGCTTGCTTCAGAAATCACGGCTTCTCTGACTCTGACATCAGAAGCATCCTTAGAAATGCTCCCAAGGTGCTCACATGCGACCCCAACAAAAGGATTTTGCCAAAGTTTGAATTTTTACGCTCCAAAGGTGCTTCGAGCTCTGACATTGTGCAGATCGTGAGCAGGAGCCCTAGAATCCTGTATTCAAGCCTCGAGAAAAGCATAATCCCTACTTATGAATTGTTGAGAAGGTTCCTTCAATCTGATGCCAAAATTATTGATCGTATACTTACTTGTCGATATGTCTTTGGTAATGACCTTGTTGTAAGGAATGTGGGGTTGTTGCTTGATGATGGAGTCACGGACTCAAACATCACCTATTTGTTAGGGAGAAGACCATCTATACTCATGTCTTATGACATGAGAAGGGCTTTGGATGAGGTTAAGGATATGGGGTTTGATCCTTCTAAGATCACTTTTGGTGTAGCTTTGCTAGCCAAGAGGGCCATTTCCAAATCCCAATGGGATTCTAAAGTTGATGAGTTCAAGAGATGGGGTTGGTCTGAAGAAATGGTTCTTGATGCGTTTAGGAGGAGGCCCTTCTGTATGCTTGTGTCCAAGGATAAAATTAATGAGGTGATGAGATTTTGGGTCAATCAGATGGGTTGGAACTCTTTGGACCTTGTCAGAAGGCCAGAGATTTTTTCATATAGTTTGGAGAAAAGGGTCATTCCGAGGGCTTTTGTTGTTCACTATTTGATCTCAAAAGGTTTGAGAAAAAATAATGTCTGTGAATTGTCTACCCCATTTGCTGTTACTGAAAAGTTGTTTCTTGAAAAGTATGTGAAATGTTTTAAGGAGGAAAGGCATCAACTGTTAAAGCTATACCAGGAAAAAATGAGTGTTCAAAAGAAAGGGAGGATGGTAGCTATCGATTAG 1161 0.4177 MLSSQRFKPLLLHHLKGIPFQTPKLNPVVSTLSLKHSTTTSDQNQFTLSYLTTNCGFSPETARKTSKQVRFDTAEKPDSVIACFRNHGFSDSDIRSILRNAPKVLTCDPNKRILPKFEFLRSKGASSSDIVQIVSRSPRILYSSLEKSIIPTYELLRRFLQSDAKIIDRILTCRYVFGNDLVVRNVGLLLDDGVTDSNITYLLGRRPSILMSYDMRRALDEVKDMGFDPSKITFGVALLAKRAISKSQWDSKVDEFKRWGWSEEMVLDAFRRRPFCMLVSKDKINEVMRFWVNQMGWNSLDLVRRPEIFSYSLEKRVIPRAFVVHYLISKGLRKNNVCELSTPFAVTEKLFLEKYVKCFKEERHQLLKLYQEKMSVQKKGRMVAID. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04157 386 PANTHER CGI-12 PROTEIN-RELATED 43 361 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 FunFam Mitochondrial transcription termination factor-like 145 363 - -
Seca5g04157 386 Gene3D Transcription termination factor 3, mitochondrial 172 369 IPR038538 -
Seca5g04157 386 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 Pfam mTERF 245 351 IPR003690 GO:0003690|GO:0006355
Seca5g04157 386 Pfam mTERF 83 228 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04157 Seca-Chr5 99075809 99076969 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g04157 mTERF 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04157 K15032 - gmx:102666622 427.943