Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04153 ATGTTCAAAGCATCTCTCTGCCGAAATGGTTTTGCAATCACAAGAAAATCAACCCCCCCAAAACTTGACCCTCTTTTGCGGCACTTGCCGTTTTCATTTTCCCTCACATTCTTCAGCACCACCACTTCATATTCAGACCCTCACCCATTCGCTGTGTCCTACCTCATCAACAATTTTGGCTTCTCACCAGAATCCGCTCTCAAAGCTTCCAAGCGTTCTCGTTTCAAGACCTCAGAAAAGCCCGATTCAGTTGTCACCTTCTTCAGAAACCACGGTTTCCCTGAGCCAGTTATACGCAGCATCATCAGAAGGGAACCATGGCTCCTTTCATGCGATCTCGACAAAAGGGTTGTGCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTACCTCTGACATTGTTCGCATGGCGACAGGGAGCCCCAGATTCCTGCAATTAAGCTTGGAGAAGAAATTAATCCCAGCTTATCAATTGGTAAACAGATTCGTTGAATCTGACGATAGGACTCTTGCTTCTATACTTTACTGTCCAACTTTGCTTTATAGCAAATCTCTTGCAGAGAACGTCAAATTGTTGATTGATAATGGTGTGGCCAGTTCCAACATTTACAGAATCCTTCGTTTGAAGCCTTATGTTCTATGCTCTACTAACTTGGGGAAGATTGTTCAGGAAGTGAAAGACTTGGGATTTGATCCCTCCAAATCATACTTTGGTGATGCAGTGCTTGCCAAAAGAGCCACTAGCAAATCCAAGTGGGATGAGAAAATTGATACCTATAAGAGGTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAAGAAACAGCCACAATGTATGTTAAGATCCAGCGATAAAATCAATAGGGTGATGCAGTTTTGGGTTAATCAGTTAGGTTGGGATTCTTCTTATCTTGTCAAGGCACCTGGGATTTTTTCATATAGTTTGGAGAAATGGATCATACCAAGGGCTTCGGTTATCCACTATCTTCTATCCAAAGGTTTGAGAAGCAAGAATGCCAGCTTGCTTGCACCATTTTTTGTGTCTGAGAAGGTTTTCCTGCAAATGTGTGTAACATGTTTTGATGAGGAGGATGCTTCTAAGATTTTGAAGTTATATAAGGGAAAAATGAATGTTATAGATAAAGGGACACAGGGGAACCGTGCCATGTCATGTTCATAA 1185 0.4203 MFKASLCRNGFAITRKSTPPKLDPLLRHLPFSFSLTFFSTTTSYSDPHPFAVSYLINNFGFSPESALKASKRSRFKTSEKPDSVVTFFRNHGFPEPVIRSIIRREPWLLSCDLDKRVVPKFQFLLSKGASTSDIVRMATGSPRFLQLSLEKKLIPAYQLVNRFVESDDRTLASILYCPTLLYSKSLAENVKLLIDNGVASSNIYRILRLKPYVLCSTNLGKIVQEVKDLGFDPSKSYFGDAVLAKRATSKSKWDEKIDTYKRWGWSEETILEAFKKQPQCMLRSSDKINRVMQFWVNQLGWDSSYLVKAPGIFSYSLEKWIIPRASVIHYLLSKGLRSKNASLLAPFFVSEKVFLQMCVTCFDEEDASKILKLYKGKMNVIDKGTQGNRAMSCS. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04153 394 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 SMART mt_12 171 199 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 PANTHER CGI-12 PROTEIN-RELATED 48 362 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 Pfam mTERF 248 354 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 Pfam mTERF 86 232 IPR003690 GO:0003690|GO:0006355
Seca5g04153 394 Gene3D Transcription termination factor 3, mitochondrial 166 366 IPR038538 -
Seca5g04153 394 FunFam Mitochondrial transcription termination factor-like 149 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04153 Seca-Chr5 99014272 99015456 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g04153 mTERF 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04153 K15032 - mtr:25488156 370.548