Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04144 ATGTTCAGTCAGAGCATGGATCCTGCAAGGGAAGCGGGTGGTGTTGCAGGGACCGTGCTAATTCCCATGCGTTTCGTGTGGCCATATGGCGGACGAAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTACCAATGTCACCAGTGGAAGGTTGCCCAACTGTATTTCAAGTTATTTATAGCTTGCCCCCCGGTTACCATCAGTACAAATTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTGTGTACCTGGAGAATATGGGATGGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACATACCTGTTATGACTCCAGACATTGCTTCTGGAAATAACATGGATGTGGATAATGAGGCTTTTCGTCGTATGGTAAGAGTTAGTCATACCTCAGAATTTGTGTTTGTTGTCGACATGGCTGCTCTTTGTATGCTGGCTTTTGGCTATGTTGTTATTTTGAATGAAATTTCAAAGAGAAGTGTTTATACTGTGATCTGTCTGGAGTCTGGACAATGTTTGTTGAGAACTTTTAAGACAATCGTCTTGATTATCTTATTTGTCTTAAGTCATAATCCTGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATACTGATGTACAGATCTCCCGTCAACGTATTTCTGCATATCTGTCTTCACACACTGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGACGTTGATTTGCCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATTTACATGGCTCCTCTCTGGGACTTGAGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTCGGATTTTATCTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCTTACAGAAGAGGAGCTTGAAACACACACCATATCAGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAAAACAATGGACATGGCTCTGCATTTTCAAGACGTTTTATCCATGCAGGGCCATATGATAATCTGAAAGATATTGCCTTGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCACCTTCTGAAGATGGTTCATTTCCACAGTTGCTACATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCATTGCACTAGTTCATTGCCTATACTTCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATCGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAAACTCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTTGATGACAATGACTCATTACTGGATATATATTGTCGGAGTGATATAACGGCTTTGGCAAAGGACAGAGCTTATACGCATATTAATCTCGATGAGATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGATGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCGCTGCAAAAAGTAATGGAACGGTTGGCAAATCCAGGTGTCAGGCGACTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTATTTCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAG 1665 0.4198 MFSQSMDPAREAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEWRHDEHQPCVPGEYGMVNTVFLATDPNYIPVMTPDIASGNNMDVDNEAFRRMVRVSHTSEFVFVVDMAALCMLAFGYVVILNEISKRSVYTVICLESGQCLLRTFKTIVLIILFVLSHNPDGTLSEVLPRISDTDVQISRQRISAYLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDLSKGQFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGSAFSRRFIHAGPYDNLKDIALKILQKEVSTVPIIHSPSEDGSFPQLLHLASLSGILKCICRYFRHCTSSLPILQLPICAIPVGTWVPKIGESNRRPLAMLRPNSSLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLQKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04144 554 ProSiteProfiles CBS domain profile. 234 296 IPR000644 -
Seca5g04144 554 CDD E_set_AMPKbeta_like_N 22 100 - -
Seca5g04144 554 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
Seca5g04144 554 ProSiteProfiles CBS domain profile. 418 475 IPR000644 -
Seca5g04144 554 SUPERFAMILY CBS-domain pair 221 391 IPR046342 -
Seca5g04144 554 SUPERFAMILY CBS-domain pair 419 553 IPR046342 -
Seca5g04144 554 SUPERFAMILY E set domains 21 102 IPR014756 -
Seca5g04144 554 Pfam CBS domain 507 553 IPR000644 -
Seca5g04144 554 Pfam CBS domain 420 466 IPR000644 -
Seca5g04144 554 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 214 552 - -
Seca5g04144 554 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Seca5g04144 554 ProSiteProfiles CBS domain profile. 500 554 IPR000644 -
Seca5g04144 554 SMART cbs_1 504 553 IPR000644 -
Seca5g04144 554 SMART cbs_1 240 289 IPR000644 -
Seca5g04144 554 SMART cbs_1 422 470 IPR000644 -
Seca5g04144 554 Gene3D - 210 394 IPR046342 -
Seca5g04144 554 Gene3D - 402 554 IPR046342 -
Seca5g04144 554 Gene3D Immunoglobulins 21 110 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04144 Seca-Chr5 98904783 98913798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04144 30 137 Protein tyrosine phosphatase (PTP) family AT3G52180 27.027 9.47e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04144 - - pvy:116132839 791.571