Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g04139 | ATGGAAGCATATGGCGGCTACTTGGTGGATGAGAAAGCCGTTAGGGTTGAGAACGCCTTCTTAGGATTTCTCAAAAGCTTCAGATCTGAGAATCGGAACGATCTCCATTACGAAGCGGAGATAGAAATGATGAAAGCCAACGAATCCAACACCATGTTCATCGATTTCGACCACGTCATAACATTCAGTGATCTCCTCCACAAAGCTATCTCTGATGAATATTTGAGGTTTGAACCTTATCTGAAGAACGCCTGTAAGAGGTTTGTTATGGAGCTCAAGCCAACCTTCATATCTGATGATAACCCTAACAGGGACATCAACGTTGCCTTCTACAATATTCCAATCGTCAAGAGGCTGAGGGAATTGGCTACATCAGAAATTGGAAGGCTTGTATCCGTGACAGGAGTGGTAACGAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAAGGGACTTTCAAGTGCCTAGAATGTGGTGGGGTTATAAAGAATGTTGAACAACAATTCAAGTATACTGAGCCAACAATATGTGTGAATGCGACCTGTAACAACCGAGCAAAGTGGGCACTACTGCGGCAAGAGAGCAAATTTGCTGACTGGCAAAGGGTTAGGATGCAGGAGACATCCAAAGAGATACCTGCAGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTAGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACGGGTACTGTAGTTGTTATACCTGACATATTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGCCGTCGGGAAGCTTCACGCAAGGGTGCTACTGCTGGAAATGAAGGTGTGAGGGGCCTCAGGGCTTTGGGAGTTAGAGACCTCTCCTATCGACTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGACATCAGGAATAGAAAGAAGGATGCAGATGAAGATGATCAGCAATTTACTGCACAGGAGCTGGATGAAATTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGCATTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGCGAGCAATCCTTCTTATGCTTATGGGTGGTGTCCACAAATTAACTCATGAAGGCATCAACCTAAGAGGAGATATAAATGTTTGTGTTGTGGGAGATCCCAGCTGTGCAAAGTCTCAATTTTTGAAGTATACTTCAGGCATAGTTCCAAGGTCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAAAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCAGGGGGACGCTATGATAAGTCTAAGCCACTAAAGTATAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTTGATCTTGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCTCATCATATCGTGAGAGTTCATCAAAAGCGTGAAGATGCTCTTGCTCCTGCATTCACTACAGCAGAACTAAAGCGTTACATAGCTTATGCAAAAACTCTTAAACCAAAGCTCACGGCTGATGCCAGAAAATTGCTGGTAGACTCTTATGTTGCTCTCCGTAGAGGTGATACAAATCCTGGGAGTCGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATTAGGCTGTCGGAGGCCATTGCGCGAAGTCATTTGGAAAATCTGGTACAACCTCGTCATGTTCGTTTAGCAGTAAGACTGCTGAAAACATCCATAATAAGGTCTTTTGTCGTGACTGTGTATTTTAATTTTTCCTGCAGTGTGGAGTCCAGTGAGATTGATCTGTCTGAGTTTCAAGAAGCAAACCGGGATGATGGCACAGGTAGTGGTGATGGAAATGATAATAATAGAGACGCTGATGGTCAAGATGGAAACTCTGCAGCTCCGCAAGCTGCTGGAACTGATGAAAATCCAGCAGATGGATCTAACCCTCAAGGGAAGAAGCTTATTATAAGTGATGAATATTTTCAGAGAGTTACCAGAGCCCTTGTCATGCGTCTTAGACAGCATGAAGAGACTGTCATACAAGAAGGAACTGGTTTGGCTGGCATGAGGCAACGAGATTTGATTCAATGGTATGTAAACCAGCAAAATGAGAAAAACAATTACAGTTCTATGGAGGAGGCAGCAGCAGAAGTTACCAAAATTAAAGCTATCATAGAGAGTTTAATTAGAAGAGAGGGCCATTTGATAGTGGTAGATGATGGTAGGCAAGCAGCAGAAGCTGCAGGTGCAGAGCACTCAGCATCCATATCTAGAAATGATCGAATTTTAGCCGTGGCTCCTAATTATGTCATTGATTGA | 2544 | 0.4387 | MEAYGGYLVDEKAVRVENAFLGFLKSFRSENRNDLHYEAEIEMMKANESNTMFIDFDHVITFSDLLHKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNRDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICVNATCNNRAKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERSECRREASRKGATAGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRRETDIRNRKKDADEDDQQFTAQELDEIQRMRNTPDFFTKLVESIAPTVFGHPDIKRAILLMLMGGVHKLTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREDALAPAFTTAELKRYIAYAKTLKPKLTADARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARSHLENLVQPRHVRLAVRLLKTSIIRSFVVTVYFNFSCSVESSEIDLSEFQEANRDDGTGSGDGNDNNRDADGQDGNSAAPQAAGTDENPADGSNPQGKKLIISDEYFQRVTRALVMRLRQHEETVIQEGTGLAGMRQRDLIQWYVNQQNEKNNYSSMEEAAAEVTKIKAIIESLIRREGHLIVVDDGRQAAEAAGAEHSASISRNDRILAVAPNYVID. | 848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g04139 | 847 | ProSiteProfiles | MCM family domain profile. | 342 | 548 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | MobiDBLite | consensus disorder prediction | 682 | 721 | - | - | |
| Seca5g04139 | 847 | Pfam | MCM6 C-terminal winged-helix domain | 727 | 846 | IPR041024 | - | |
| Seca5g04139 | 847 | Pfam | MCM AAA-lid domain | 567 | 652 | IPR041562 | - | |
| Seca5g04139 | 847 | Pfam | MCM P-loop domain | 330 | 552 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Seca5g04139 | 847 | MobiDBLite | consensus disorder prediction | 679 | 727 | - | - | |
| Seca5g04139 | 847 | FunFam | DNA helicase | 725 | 847 | - | - | |
| Seca5g04139 | 847 | ProSitePatterns | MCM family signature. | 451 | 459 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Seca5g04139 | 847 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Seca5g04139 | 847 | Gene3D | - | 320 | 656 | IPR027417 | - | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 277 | 298 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Seca5g04139 | 847 | CDD | MCM6 | 345 | 651 | - | - | |
| Seca5g04139 | 847 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 352 | 658 | IPR027417 | - | |
| Seca5g04139 | 847 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Seca5g04139 | 847 | SMART | mcm | 115 | 653 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | Gene3D | - | 8 | 115 | - | - | |
| Seca5g04139 | 847 | FunFam | DNA helicase | 327 | 656 | - | - | |
| Seca5g04139 | 847 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Seca5g04139 | 847 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 787 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Seca5g04139 | 847 | Gene3D | - | 146 | 197 | - | - | |
| Seca5g04139 | 847 | Gene3D | - | 725 | 847 | - | - | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 383 | 398 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 443 | 457 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 471 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 522 | 530 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 495 | 507 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca5g04139 | 847 | Coils | Coil | 786 | 806 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g04139 | Seca-Chr5 | 98862700 | 98870428 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g04139 | 1 | 847 | Core DNA Replication Machinery Family | AT5G44635 | 72.603 | 0.0 | 1291 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g04139 | K02542 | - | gmx:100787290 | 1394.79 |