Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04125 ATGGCATCTTCCCAAGTTGAAATCGCTTCATCTTCGCCATTCGGTTGCGTTCTGAGGGACCGTAATCGCCGTGATGGATGCAGCAGCAATGTCGCTTTCCAAAGAAACATCAAGAACTTTGTCATGGACCACCTTAACACGTGCATGTCCATGTCCTCTGATTCATCACCAAACGAGAACAACAACCAGGCTCAGATCAACAATGCTGGTTCTTGGGTTTCAAAATCTGTCAAAAACAACAACAATCTTGCAAGGCTTCGTTTCACAAGAACCAATCACAATGATGACAGCACCAGCAGCAACAACAAGAAGGACAAAGATGAATCTTCTTTGGCCTCATTGATCAGCCCCAGGCACTCAAGGCTTCTTGATCGATGGGCTGCAAGACAAGCACGTGAGATTGTGTCAAATTTGGAGAATGAGGCTGAGTTGTTGTCTATGGACAACACCAACAATAACAATAACAGCAAGAACATGCTTGTAAGGACATCTAGTTCTACCTCTGATGGGTGCTCCTCTGAAATCCCAAACCTTGGTGCATCTTCCCTTGTTCAGATATGGGAGAAGAGGCTTAACCAATCCAATGGATCCAAACCCAATGGTTCCTCCTCAGCAGAGAGGACCAGTCCCAATGCTGCTACTAGTCCCACCTTCAACAACGAGAATGCATTTTCCTCTGTGGAAGAACAATGCAGAGGAGGGTCAGAAGCAGGGGAATGTTCTGAAGGACCATTAGGAAATGAGGAATCTTTTCCTGATTGGGAATCTGATAAGACAGGACAGGGTGATCAATCCATTTCGCCACGAGGGAGGTGGTGTTCTTCAGAGAGTGACAGGGTCAGTGTTGCAGACATTATAAAGAAGCTCACTGCTACAAACCAACCTCAGAGTCCTCTTCCATTGGTTGGTGATGACAATGATCATGAAGGGTGTAGTAGCAGCGTGGCAAGTTCTCCTTCTAGAGAAGAACATTCAGAGCAAAGGGCTTTTCCTCAGGTCACTTGTTCCCTGAGAATTAGAGGGCGTCGAGCATTCACTGATTTGCTTATGCAGATGGAGAGTGACAGGAATGGGGAGCTAAAGAACCTGGCAGAACGTGGAGCAGTCTCCAAGTTCACACAAAGAGGTCGCGTTCAGTCATTGCTTCGACTTAGATTATTACAACGTGATGTGGCAGCTAATGATCCACCTCACCAGAAACCAACAGCATCTGAAGTGAACAGACAGCCACAGGGATCTGCAATTATGCAACTAAGGGAAATATTTAGCACTGGAGCTGAAAATAGAACTACAGTCCAGGCAGAAGTAGCTAACCCAAGAAGTCCTCGTAAGGAGATAGTAAATAACACCACACAATTGGATAACTCCCCCACCACTAATCAACTCAGCAAAGACACAAGCAGCCAGATTGCTAATGGCACTGCTAATCACTCTACAGAATCCACACAAAAGTCAGTGTCTCAGGCTAGTGTAGATCATAATAGAGAAGAAGCTCATCCAAGTTCAGATGTCAAGTTCCAAGAAACAGGTGTTGAGGCTCAGCATGATGGCTCACAGGAAACTGCTGAGCCAACTACATCCGTGACAGATTCAAATATAAATAAGAGGGAAGAAAAGGCAGAGGCAACCAACCAACAGTATGCTACAGCTGAAAGCAGCTTTGATGAGACAGCAGATGAGGAAGAGGAAAGTAACCAGCAGTATGCTGAAACTAGTTATGAAGAGGCAAGTGACCTGAACAATGCTGAAAGCAGTTACGAAGAGATGGTAGAAGAGTTAGAGACCATTGATCAAAATTATGATTGGATTAGTGAAATTTCTCGGCCTAGGAGCTATTGGGAAGAGCGTAGGCAAGCTTGGTATAGAGAGATGCTTGACAATGATTATCAGAATGAGGATATACGGGTGCTTCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGGGAAACAATGGATAGATTGATGGAAACTCATAGGGGAACACAAACAAATTTAGTTGGTAGTCAAGATGATGAGGAAGACAACCAAGGGTTGATAGAATTTTTACAAGAACACATCCCTTCTGCAACCACTTCTCAAGTAGATGGAAGAGAGACAGGTGAGGATGAAGAGGAGGAAGAAGAAGAACAGGCAGGGGAGCAGGAGCATGAGGGGGAGAGCTTGATGAGTGGTTCGTATCATGAAGTTGGTGACTATTCTAATCAATCCTCATCATGGAGTTACAGAGACAATGAAGCCGGTGATGATTTTGATAGAGTTGTTTCTACATCCTCACAACCTTATCAAGCTCAGTCTTTTGATCAGGATAGTCGGCGATATTCTTCATCCACCAATCATAATTCAATTGAAATGGAACTGATATATGATTTGAGAAGTCATATGGAGCAACTTTATCAGGAGATGTCTGAACTTAGGAAATCAATAAAGAGCTGCATCGGTATGCAGATGCAATTACAACAATCCTTGAACCATGAGGTTCACACAGTTAAAAAAGAAGGAAAGAAGTCGTCCCATAAAAGGGCTCCGAAGAAAGGCAACTGCTGCATTTGCTATGACATGAAAGTTGACTCGCTTTTATACAGGTGTGGACACATGTGTACGTGTCTGAAGTGTGCTAATGAGTTGCAATGGAACAGTGGAAAATGCCCAATATGTCGAGCTAAAATAGTAGATGTTGTTCGTGTGTATATTGATGTTTAG 2712 0.4377 MASSQVEIASSSPFGCVLRDRNRRDGCSSNVAFQRNIKNFVMDHLNTCMSMSSDSSPNENNNQAQINNAGSWVSKSVKNNNNLARLRFTRTNHNDDSTSSNNKKDKDESSLASLISPRHSRLLDRWAARQAREIVSNLENEAELLSMDNTNNNNNSKNMLVRTSSSTSDGCSSEIPNLGASSLVQIWEKRLNQSNGSKPNGSSSAERTSPNAATSPTFNNENAFSSVEEQCRGGSEAGECSEGPLGNEESFPDWESDKTGQGDQSISPRGRWCSSESDRVSVADIIKKLTATNQPQSPLPLVGDDNDHEGCSSSVASSPSREEHSEQRAFPQVTCSLRIRGRRAFTDLLMQMESDRNGELKNLAERGAVSKFTQRGRVQSLLRLRLLQRDVAANDPPHQKPTASEVNRQPQGSAIMQLREIFSTGAENRTTVQAEVANPRSPRKEIVNNTTQLDNSPTTNQLSKDTSSQIANGTANHSTESTQKSVSQASVDHNREEAHPSSDVKFQETGVEAQHDGSQETAEPTTSVTDSNINKREEKAEATNQQYATAESSFDETADEEEESNQQYAETSYEEASDLNNAESSYEEMVEELETIDQNYDWISEISRPRSYWEERRQAWYREMLDNDYQNEDIRVLLERRTVSTFLSSDFRETMDRLMETHRGTQTNLVGSQDDEEDNQGLIEFLQEHIPSATTSQVDGRETGEDEEEEEEEQAGEQEHEGESLMSGSYHEVGDYSNQSSSWSYRDNEAGDDFDRVVSTSSQPYQAQSFDQDSRRYSSSTNHNSIEMELIYDLRSHMEQLYQEMSELRKSIKSCIGMQMQLQQSLNHEVHTVKKEGKKSSHKRAPKKGNCCICYDMKVDSLLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYIDV. 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04125 903 MobiDBLite consensus disorder prediction 687 781 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 512 531 - -
Seca5g04125 903 CDD mRING-HC-C3HC5_NEU1 848 900 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 193 275 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 89 112 - -
Seca5g04125 903 ProSiteProfiles Zinc finger RING-type profile. 851 890 IPR001841 -
Seca5g04125 903 MobiDBLite consensus disorder prediction 88 113 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 392 411 - -
Seca5g04125 903 Pfam Zinc finger, C3HC4 type (RING finger) 848 895 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 702 718 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 257 274 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 731 747 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 755 781 - -
Seca5g04125 903 SUPERFAMILY RING/U-box 850 895 - -
Seca5g04125 903 PANTHER BNAC05G24000D PROTEIN 1 902 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 431 566 - -
Seca5g04125 903 Coils Coil 579 599 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 431 489 - -
Seca5g04125 903 Coils Coil 128 155 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 193 229 - -
Seca5g04125 903 Coils Coil 701 721 - -
Seca5g04125 903 Coils Coil 533 553 - -
Seca5g04125 903 MobiDBLite consensus disorder prediction 146 175 - -
Seca5g04125 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 902 IPR013083 -
Seca5g04125 903 MobiDBLite consensus disorder prediction 294 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04125 Seca-Chr5 98736063 98740537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04125 851 899 C3H Transcription Factor Family AT3G06140 40.816 1.38e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04125 - - gmx:100796627 1017.68