Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04116 ATGCGTTCTTGCAGGGACTCATTCAAGAGCATCAACACCATGATTGACTATCTCTTGAAACTCACCGAGTCTCAGCCTGATTACTGTTCTGATCACATGATCAAAGGTCTCATTCAGGCTATGCTTCTAGCTGGAACAGACACCTCAGCACTGGCAATAGAGTCACTCATGATGTCTGAATTGTTGAACCATCCAGAAGTATTGAAAAAGGCAAAGGATGAATTAGACACACACATTGGAAAAGACCGATTGGTAGATGAGCAAGATTTGTCAAAACTCCCATACCTTCAAAATATTATATCTGAAACACTTCGATTGCATCCTCCCGCTCCATTGCTATTACCACATTATTCTTCAGAAGATTGTACTGTTGGGGGATTTAATATTCCACGGGACACAATAGTGTTGACTAATGCATGGCTCATTCATAGAGATCCTAAACTTTGGAGTGATCCCACAAGTTTTAAGCCTGAGAGATTTGAAAAAGAAGGGGAGGTAAACAAGTTAATTGCCTTCGGGTTAGGAAGAAGGGCATGTCCTGGACTAGGCTTGGCTTAG 558 0.4176 MRSCRDSFKSINTMIDYLLKLTESQPDYCSDHMIKGLIQAMLLAGTDTSALAIESLMMSELLNHPEVLKKAKDELDTHIGKDRLVDEQDLSKLPYLQNIISETLRLHPPAPLLLPHYSSEDCTVGGFNIPRDTIVLTNAWLIHRDPKLWSDPTSFKPERFEKEGEVNKLIAFGLGRRACPGLGLA. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04116 185 PRINTS E-class P450 group I signature 33 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS E-class P450 group I signature 138 162 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS E-class P450 group I signature 169 179 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS E-class P450 group I signature 179 185 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS E-class P450 group I signature 97 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PANTHER CYTOCHROME P450 82C3-RELATED 10 185 - -
Seca5g04116 185 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 172 181 IPR017972 GO:0005506|GO:0016705
Seca5g04116 185 Gene3D Cytochrome P450 2 185 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 Pfam Cytochrome P450 7 185 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 SUPERFAMILY Cytochrome P450 11 185 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS P450 superfamily signature 44 61 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS P450 superfamily signature 179 185 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS P450 superfamily signature 170 179 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca5g04116 185 PRINTS P450 superfamily signature 98 109 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04116 Seca-Chr5 98645052 98646994 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04116 5 185 Cytochrome P450 AT4G37370 66.298 7.86e-85 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04116 K13260 - ccaj:109806032 286.96