Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04111 ATGGATGCTTCAAGTGGAAGTTCTGGTGATTCTGGTGATAAGCGAGACAGGAATCAAAGTTCTAGTGAGGGAAACCCATCCTTCCATTTCACTCCTCGTCACTTAGCTCAACTTGAAGCATATTTGAAGCTATGCCCACATCCAGATGAAACCCAACTTCATATAATAGCAAGGGACCTAGGGCTTGATCCAGAACAGATTTATCATTGGTTTCAGACCAAAATCCAGGGAGATCATGAGGGGTCTGAATCTGAGCTAGAGTCTCCAAGCACAGAAGTTGCTAGGAAGAAGGAAAGAAGACAAATGTTAGAGATTGCAGATGCTGCTATAAGCGAACTCCTTAAACTCATGACCACCGATAACCCCCTTTGGACCAAATCCTATGATATTGTCGGCTTTGTTCTCGTTCCTGAAAGCTATGCCAACTTGTTTCCTAGGGCTATTAACTTGCCAAGTCCAGACATTATTCATCAAGAATCTTCCAAAGATTCAATAGTAGTAAAGCTTGGTGTGATGCAATTGATTGAAATGTTTTTAGATTCGGAGAATTGGGCTAATCTTTTCCCAACCATTGTCTCAAAAGCAAAAACATTGAGAGTCTTTGATATCGGTTCACTAGAAAATAAAAGTGGAGCCTTGCAATTGATGTATGGAGAAATTCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTCATCTTCCTTCGCTCTTGTGAACAAGTTGGGGATGGTTTATGGTTGATAACTGATGTGTCTGTTGATAATGCGTCTCTTGATAACAACTATGAAGGCCAAATCCCTGATTCTCCTCTTCGAAAGTTCCCCTCAGGCTGCATGATTAAGCAATTGCCTAATGGATTTTCCAAGGTTACTTGGATTGAACATGTGGAAGTGCAAGAAAAGAGCGAAATAGACAATCGCTACAAAGAGCTTATTTCTAACAATTTCGCTTTTGGAGCAAACAGGTGGCTGTTTGCTCTTTACAAAATGTGTGAGAAAATTGCTTGCACTTCAATTCAGTATCTGCCAGCTCATAGAGAGATCTCTTCACCCAGAGGAAGAGAGGTCGTAATAAACCTCTCTAACCGAATGGTTCAGAACTTCTGCAAAATACTGAACCTAAGAGATCGTCCACATTTTACGAGTTTTCATGTGGGCAGGAATGAACTTTTTGTGAGTTTTCATAACAACATACCATCACTCCAACCAGAAGGCTTCATAGGCACAGCTATGCTATCAATTTCGCTTCCTCTGCTTCCACAGAATGTGTTTTACTATCTCAAGCATCTGTATCCACGACGTCGGTGGGATGTTCTTTCCGTTGGGAATCCACTGGAGGAGATCACATATATCCCAATCAGCGATACCAGTCGTATTTCAGTTATTAAGACTTTCAACCGTGATGACAACGATTTGCTGATATTTCAAGAGAGTAGTATAGATCATTTGGGAGCGTATGTTGTGTTTGCTCCACTGGATGAAGCAAGTGGGGAAATGGTGATGAATGGAGAGTCTACGAATGTGGCAGTGCTTCCGTCAGGGTTTATGATCAGTGGGGACAATAGTGCAGTTGCTGAGAGTAGAAATCCTCATAGATCAGGAGGAACGTTGTTGACTACATGTTACCAAGTACTGGTTTGTCATGACTCACTGACCCTGGAAATGAAAGTTGAAGCTATGAAGTCTCTCATTGGACTCATCATCTCAACAATCCAAAGGATTACCCTTGGTCTCGAGTGTCCCAATTCTGAGCTCGAGCGCAGCCTGAGCGCAGAAAAACAGAGAGCAATTCGAGGAAATTCGGCTCGAGCTGAGCTCAAGCGCAGCCTGAGCGAGAACTCGCGCTTGAGCTGCGCTCAAGCGAGGCTTGAGCGCAGAGAGAGAGAGAGAGGTTCTAGTGAGAGAAAGTCCCAGCAAAGGCCAAGAACGATTTCTACTCATCAAGAACGAGTCTTGACTCAATCTTTCTCCCATCAAGGCTCTCCGTTCTTCGTTCTTTCTCCGTTTTCTCGACTCACAGGTTTCCCTGGACGACGGTCCTTGGATTCTCAGGCCGAGCGCTCATCACAGTCAAGTAACAGAGAAAAGACCCCGGGTGTCGGGAACAACACCTCACAGCCTTGCATTGCATCTTGA 2136 0.4387 MDASSGSSGDSGDKRDRNQSSSEGNPSFHFTPRHLAQLEAYLKLCPHPDETQLHIIARDLGLDPEQIYHWFQTKIQGDHEGSESELESPSTEVARKKERRQMLEIADAAISELLKLMTTDNPLWTKSYDIVGFVLVPESYANLFPRAINLPSPDIIHQESSKDSIVVKLGVMQLIEMFLDSENWANLFPTIVSKAKTLRVFDIGSLENKSGALQLMYGEIHVLSPLVPSREFIFLRSCEQVGDGLWLITDVSVDNASLDNNYEGQIPDSPLRKFPSGCMIKQLPNGFSKVTWIEHVEVQEKSEIDNRYKELISNNFAFGANRWLFALYKMCEKIACTSIQYLPAHREISSPRGREVVINLSNRMVQNFCKILNLRDRPHFTSFHVGRNELFVSFHNNIPSLQPEGFIGTAMLSISLPLLPQNVFYYLKHLYPRRRWDVLSVGNPLEEITYIPISDTSRISVIKTFNRDDNDLLIFQESSIDHLGAYVVFAPLDEASGEMVMNGESTNVAVLPSGFMISGDNSAVAESRNPHRSGGTLLTTCYQVLVCHDSLTLEMKVEAMKSLIGLIISTIQRITLGLECPNSELERSLSAEKQRAIRGNSARAELKRSLSENSRLSCAQARLERRERERGSSERKSQQRPRTISTHQERVLTQSFSHQGSPFFVLSPFSRLTGFPGRRSLDSQAERSSQSSNREKTPGVGNNTSQPCIAS. 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04111 711 ProSiteProfiles 'Homeobox' domain profile. 21 74 IPR001356 GO:0003677
Seca5g04111 711 MobiDBLite consensus disorder prediction 617 646 - -
Seca5g04111 711 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 575 IPR042160 -
Seca5g04111 711 CDD homeodomain 30 72 IPR001356 GO:0003677
Seca5g04111 711 MobiDBLite consensus disorder prediction 682 711 - -
Seca5g04111 711 SMART START_1 104 333 IPR002913 GO:0008289
Seca5g04111 711 CDD START_ArGLABRA2_like 99 332 - -
Seca5g04111 711 ProSiteProfiles START domain profile. 95 336 IPR002913 GO:0008289
Seca5g04111 711 Pfam START domain 104 333 IPR002913 GO:0008289
Seca5g04111 711 SMART HOX_1 23 85 IPR001356 GO:0003677
Seca5g04111 711 MobiDBLite consensus disorder prediction 619 643 - -
Seca5g04111 711 MobiDBLite consensus disorder prediction 675 711 - -
Seca5g04111 711 Pfam Homeodomain 30 72 IPR001356 GO:0003677
Seca5g04111 711 SUPERFAMILY Homeodomain-like 25 73 IPR009057 -
Seca5g04111 711 SUPERFAMILY Bet v1-like 98 334 - -
Seca5g04111 711 Gene3D - 109 308 IPR023393 -
Seca5g04111 711 MobiDBLite consensus disorder prediction 1 30 - -
Seca5g04111 711 Gene3D - 10 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04111 Seca-Chr5 98575347 98581725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04111 53 580 Homeobox Transcription Factor Family AT4G04890 34.664 1.69e-93 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca5g04111 START 5.5e-28 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04111 K09338 - aprc:113852280 484.182