Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04110 ATGGCTTCTTCTTTTCCTCTTTATCAGCCAACGCACTGCTTCTTCTCCACGACCCAGTTCCAAGGTTTGCGCCATGGCTTATTGTGGCGACCCACTTACTCATTTGGCTCCCATGTTGAAAACAAAGCACGACCCGTCAAAGCTTCTGTTGATGCACCTCCATTTCCCTTGTTTCAACCTCCCAAAGTTGAAGAGTCATCGTCTGAGTTGGAGCCTGCAGATCCTGATTTCTACAAGATAGGTTACGTCCGAAGCATGAGAGCTTATGGAATTGATTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTCGCCGAGCAAGGGTCATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCGGATATAATTCCCATTGGTCATCCAATATTTGATATTATCAACTCGACAAATCCTGAGACAGATTGGGACTTAAGGTTAGCATGCCTTCTCTTATTTGCATTTGACTGCAAAGACAACTTTTGGCAGTTATATGGTGACTTCTTACCAAGTGCAGATGTGTGCCCTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAGTCTTGCTTCTATTATGAGAAACCAGCAACGACGAGCCTTAGAATTCTGGGAGAAAAACTGGCATAATGGTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCATTTGGGCAGTAGGTATTGCACAATCACGATGTATTAACATGCAAATGAGAGTTGGTGCACTGACTCAAAATGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCGAATTGTTTTTTCCATTGGCGTTATAAGGATCGGATGCTTGAGGTTCTTATAAATGCTGGACAGCGGATCAGAAAGGGAGATGAGATGACAATTAATTACATGAACGCACAGAAGAATGACATGTTAATGCAAAGATACGGATTTTCATCACCTGTGGTAATTTTCTTTCCATTTAAATCTTGA 1050 0.4238 MASSFPLYQPTHCFFSTTQFQGLRHGLLWRPTYSFGSHVENKARPVKASVDAPPFPLFQPPKVEESSSELEPADPDFYKIGYVRSMRAYGIDFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFAFDCKDNFWQLYGDFLPSADVCPSLLLATEEELLELQDPSLASIMRNQQRRALEFWEKNWHNGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVGALTQNANMLIPYADMLNHSFEPNCFFHWRYKDRMLEVLINAGQRIRKGDEMTINYMNAQKNDMLMQRYGFSSPVVIFFPFKS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04110 349 CDD SET_LSMT 90 337 - -
Seca5g04110 349 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Seca5g04110 349 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 67 340 - -
Seca5g04110 349 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Seca5g04110 349 Pfam SET domain 99 322 IPR001214 GO:0005515
Seca5g04110 349 SUPERFAMILY SET domain 98 338 IPR046341 -
Seca5g04110 349 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04110 Seca-Chr5 98557772 98565924 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g04110 SET 5.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04110 - - gmx:100786962 606.29