Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04098 ATGGCTGAAATTCACATTCCCACAGGCGCACCCACTATTAGCCCCACCATGAGCAAACCATGTAACCCTCCACAACATGGTAATTTAATGGTTCTTTTAGCAGCCATTGTGTGTGCTTTTCTTTGTGCTCTTGGCCTCAACACTACCTTAAAATGTGTCTTCCAATGTGCTAACCGTGTCCTTACGGAGCCTCTTCAATGGATTGCTTCCCGCAGGCTCAATTCAGGGCTCAAGAAGAAAGAAATGGTAGCTTTGCCAACCTCAATTTATGCCCCTAATTCTTCTGGGTCTCCTCCATCTTCTTCAGATTCTTCTAATTGTACCATTTGCTTAGCAGAGTTCTGTGATGGGGACAAGATAAGGTTCCTACCAAAGTGCAATCACCGTTTCCATGTGGTTTGCATTGATAAGTGGCTGCTCTCTCATTCTTCTTGTCCTACTTGTAGGAACATGATCAAGTCCAATGATTCAGCACACTGCTTACGGATTGTTATATCATAG 501 0.4391 MAEIHIPTGAPTISPTMSKPCNPPQHGNLMVLLAAIVCAFLCALGLNTTLKCVFQCANRVLTEPLQWIASRRLNSGLKKKEMVALPTSIYAPNSSGSPPSSSDSSNCTICLAEFCDGDKIRFLPKCNHRFHVVCIDKWLLSHSSCPTCRNMIKSNDSAHCLRIVIS. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04098 166 Pfam Ring finger domain 106 149 IPR001841 -
Seca5g04098 166 SMART ring_2 107 148 IPR001841 -
Seca5g04098 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 155 IPR013083 -
Seca5g04098 166 SUPERFAMILY RING/U-box 106 155 - -
Seca5g04098 166 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Seca5g04098 166 PANTHER RING-H2 FINGER PROTEIN ATL78 26 154 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04098 Seca-Chr5 98451527 98452027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04098 9 150 C3H Transcription Factor Family AT3G10910 40.373 4.31e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04098 - - psat:127138077 254.218