Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04086 ATGGCTCCCGGTGTCAGAGACCTTGAGCTCACTTCCCTTGCCGGCGGCCTGAAAATCGCCGGTGATGACTCCGATGACCTCGAGGATGTGCGGCTCCTGGACTCCTACGATAATATTGACGACGGGATGAGGCGAATTCAGGTGAGGGTCTCCGGCATGACCTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAAGCCGTCGACGGCGTTCTCAGCGCCTCCGTCGCCTTGCTACAGAACAAAGCCGACATCGTTTTCAACCCGGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACCTATTACCTGAATCCAGTACACTTGGAAAGATTCCACATGGAACTCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTGAATTCTGTTGAAGGTATTTTGAGAAATCTTCCTGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCATTAGGTGAAGTTGAATATGATCCCAGTGTAATTAATAAAGATGATATAGTCAATTCAATTGAAGATTCTGGTTTCGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATAGTTTTAGGGGTTGTTGGTGTGTACAGTCTAATTGATGTACAAGTTTTAGAAGGAATGCTTAGCAGCATGAAAGGAGTAAAGCAGTTTCATTTTGATCAGATATCAGGTGAATTAGATGTTCTGTTTGATCCTGAAGTTTTCAGCTCTAGATCCTTAGTTGATGGGATCCAGGAGGGAAGCAATGGAAAGTTTAAATTACATGTTCGAAGCCCTTATACAAGGATGGCTTCTAAAGATGTTGAAGAGACCTCAACTATGTTTCGGCTCTTTATCACCAGCCTGCTTCTTAGTATTCCTCTCTTCTTCATGAAGGTAGTTTGTCCTCATATACCATTAATGTATTCTTTGTTACTTCGGCGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGTGTCTCATCCAATTTGTGGTAGGGAAGCGTTTTTATATTGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATTGCTGTGGGAACTACTGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTCACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCTAAGGGAAAGACATCTGATGCCATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGGTAAATCTGTTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAGTTCTTCCTGGTGCGAAGATTCCTGCTGATGGTATCGTTACTTGGGGTTCAAGTTATGTGAATGAGAGCATGGTAACTGGTGAATCTATACCTGTTTTGAAGGAGGTGAATGCTTCTGTTATTGGAGGTACAATAAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTACTACAGTGTTGAGTCAGATAATTAGTTTGGTTGAGACAGCCCAGATGTCTAAAGCTCCTATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCAACAGTTGTTTCTTTGGCATTATTGACATTATTGGGATGGTATATTGCTGGATCTATTGGAGCTTACCCAGAAGAATGGCTGCCAGAACATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCAATATCTGTGGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAACGGAGTATTAATTAAAGGAGGAGATGCCCTGGAAAGGGCTCAGATGGTGAAGTATGTAGTATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCTACTGTTACTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCATTGGCAAAAGCGATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCAGATACTCCCGGTACCCAGAATGATGTAAAGTCTGGGTGGCTCTCTGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTCCAATGCTTTATAGATGGGAAGCGTACTTTGGTTGGTAACAGGAAGTTGATGGCCGAAAGTGGTATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTTGAGCTGGAACAAAGTGCAGAGACGGGGATATTGGTAGCATATGATGATATATTAATTGGAGTTTTAGGGGTAGCAGACCCACTAAAGAGAGAAGCTTCTGTAGTTGTAGAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCATGCTGTTGCCAAGGAGGTTGGCATTCAAGACGTCAGGGCAGAGGTTATGCCTGCCGGAAAGGCAGACATTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGATATTGGCATGGCAATTGGGGCTGGAACTGATGTTGCAATAGAAGCTGCCGACTTTGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCGATCTTTCCAGGAAGACCTTTTCTCGTATTCGATTGAATTACGTATTTGCCATGGCTTACAATGTGGTGGCTATACCAGTTGCTGCTGGGGTTTTATATCCTTCACTGGGGATCAAGCTGCCACCGTGGGTTTCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTGTGCTCTTCCTTGCTTCTTAAAAGATATAGAAGACCTAGACTTACTACAGTACTTGAAATAATTGTAGAATAA 2979 0.4347 MAPGVRDLELTSLAGGLKIAGDDSDDLEDVRLLDSYDNIDDGMRRIQVRVSGMTCAACSNSVESALKAVDGVLSASVALLQNKADIVFNPALLKDEDIKNAIEDAGFEADLLPESSTLGKIPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPSVINKDDIVNSIEDSGFEASFVQSSEQDKIVLGVVGVYSLIDVQVLEGMLSSMKGVKQFHFDQISGELDVLFDPEVFSSRSLVDGIQEGSNGKFKLHVRSPYTRMASKDVEETSTMFRLFITSLLLSIPLFFMKVVCPHIPLMYSLLLRRCGPFLMGDWLKWALVCLIQFVVGKRFYIAAGRALRNGSTNMDVLIAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSVEEREIDSLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESIPVLKEVNASVIGGTINLHGVLHIQATKVGSTTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPEHGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVVFDKTGTLTQGKATVTTAKVFTGMQRGEFLTLVASAEASSEHPLAKAILAYARHFHFFDDSSDTPGTQNDVKSGWLSDVSDFSALPGRGVQCFIDGKRTLVGNRKLMAESGIDISTEVENFVVELEQSAETGILVAYDDILIGVLGVADPLKREASVVVEGLQKMGVIPVMVTGDNWRTAHAVAKEVGIQDVRAEVMPAGKADIVRSFQKDGSIVAMVGDGINDSPALAAADIGMAIGAGTDVAIEAADFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTTVLEIIVE. 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04086 992 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Seca5g04086 992 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Seca5g04086 992 FunFam Copper-exporting P-type ATPase A 42 112 - -
Seca5g04086 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 382 941 IPR023298 -
Seca5g04086 992 PRINTS H+-transporting ATPase (proton pump) signature 838 854 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g04086 992 PRINTS H+-transporting ATPase (proton pump) signature 866 882 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g04086 992 PRINTS H+-transporting ATPase (proton pump) signature 897 922 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g04086 992 Pfam E1-E2 ATPase 432 628 - -
Seca5g04086 992 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Seca5g04086 992 SUPERFAMILY Calcium ATPase, transduction domain A 449 535 IPR008250 -
Seca5g04086 992 FunFam Probable copper-transporting ATPase HMA5 770 923 - -
Seca5g04086 992 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 987 - -
Seca5g04086 992 CDD HMA 129 192 IPR006121 GO:0046872
Seca5g04086 992 NCBIfam HAD-IC family P-type ATPase 402 676 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g04086 992 NCBIfam HAD-IC family P-type ATPase 747 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca5g04086 992 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872
Seca5g04086 992 CDD HMA 47 109 IPR006121 GO:0046872
Seca5g04086 992 SUPERFAMILY HAD-like 648 972 IPR036412 -
Seca5g04086 992 SUPERFAMILY HMA, heavy metal-associated domain 125 197 IPR036163 GO:0046872
Seca5g04086 992 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Seca5g04086 992 Gene3D - 43 114 - -
Seca5g04086 992 SUPERFAMILY HMA, heavy metal-associated domain 40 113 IPR036163 GO:0046872
Seca5g04086 992 CDD P-type_ATPase_Cu-like 290 962 - -
Seca5g04086 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Seca5g04086 992 SFLD p-type atpase 631 918 IPR044492 -
Seca5g04086 992 NCBIfam heavy metal translocating P-type ATPase 363 975 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca5g04086 992 Gene3D - 616 923 IPR023214 -
Seca5g04086 992 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Seca5g04086 992 SFLD Haloacid Dehalogenase 631 918 - -
Seca5g04086 992 Gene3D - 656 745 IPR023299 GO:0000166
Seca5g04086 992 Gene3D - 746 797 IPR023299 GO:0000166
Seca5g04086 992 Pfam haloacid dehalogenase-like hydrolase 645 880 - -
Seca5g04086 992 FunFam Copper-exporting P-type ATPase A 125 194 - -
Seca5g04086 992 FunFam Copper-transporting ATPase RAN1 656 745 - -
Seca5g04086 992 Gene3D - 417 539 - -
Seca5g04086 992 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Seca5g04086 992 PRINTS P-type cation-transporting ATPase superfamily signature 889 901 - -
Seca5g04086 992 PRINTS P-type cation-transporting ATPase superfamily signature 813 823 - -
Seca5g04086 992 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Seca5g04086 992 PRINTS P-type cation-transporting ATPase superfamily signature 791 802 - -
Seca5g04086 992 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Seca5g04086 992 FunFam Copper-transporting ATPase 1, putative 417 539 - -
Seca5g04086 992 FunFam Copper-exporting P-type ATPase 746 797 - -
Seca5g04086 992 NCBIfam copper ion binding protein 46 109 IPR006122 GO:0005507
Seca5g04086 992 NCBIfam copper ion binding protein 129 191 IPR006122 GO:0005507
Seca5g04086 992 Gene3D - 128 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04086 Seca-Chr5 98375023 98382123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04086 1 992 Primary Pumps ATPases AT5G44790 74.529 0.0 1514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04086 K17686 - gmx:100804960 1746.48