Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04085 ATGGTCTTCTCAACTGCCTCTCTCCATGATGATGGCCCCTTTATTTCTAGGAAAAGGCTGAGGGTGTCAGATCTTGGACATCAAGATATAGGTTTGCATGCAGATGCAGGAATTTGCAGTGATATTTCCTTGTTCTCACAGCCAAATGTAGAAAGGAGTATTGGTGATATTTCCTCTTGCAGCAATATTGATGATAAACTTGATCCAGATTCTGGAATGGAGATGAGCTACCCATCAAATGTCAACAGTGGTGATGTTCCTGTGTCTACCACGGGTAATATTTCACACCTGGACCAGAGTTTCAGTGGCTATGTTCAACAGCCTACATTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGTGGTCCCTATATAAAGGAGCAGTTATATGAGGGCCTAACAACTGGTTTCTTGCCATTTGAGCTTCCTGTATATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAGCAGTTTCCTGACCATGTTTCCACTGGGTTTGCATATCTGAGTATGAGTATCGCAGGCACAAGGATGCCTACAAATTGCTCCTCCTCTTCTTGTAAGGATATGGCAGTATATGGGCAAGATAGATCTTTTGAGCATGCTGCTCTCTTGGCTGTTAACCCTGTTTCACAGTCTGTTTCGCAGTCACATATCAATTACCACATTAAGGAATCCAATCACATAAATTCAAACTCAGAAGCATTCAACAGTATAATACCTTTTCAGATGTTAGGTGAAGAATGTTGTTGGCTTTATGAGGATGAAAAGGGTATGAAACATGGACCACATTCTATTTCAGAATTGATTTCCTGGCACCGCCATGGATATCTTGGAGATAAAACAGTGATCTCTCATTCTGAAAATAAGTATGGCACCTTTGTGCTACTGTCTGCTGTAAATGCTTTGAAAGGAGAAGGATCTGGAACCATCTGTGAAATATCTGAAAACGTTTCTTCCCAATTGCACATGGGTATCATGAAAGCTGCCCGCAGAGTTGTGCTAGATGGCATTATTGGTGATATCATTGCAGAATTTGTTGCGGAAAAGAAACACAAGAGGCGTAAGATTGAAACAGCTGATCAGACTTCTGAGACTTGCATGTTGGACAATAAAATGTCTACGTCTTCTTTGGAGATGAGTAAAGGTACTGCTATTCCAAGTGAGACTGCATCTTCCCATATTTTGGATGATAAGGCTTGTCATGAAATTTCCAGACCGTCTTCAACAAACTTTAAATCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGTAAAGTTCTTTCTGATTATTGCTTGGAAGTCATGTGGAATGCAGTGTTTTTTGACACAGTGTCAGAGTTCTTATTTTCCTGGAGGAGGAGGAAACTTTGGTCTCATCCTAAGCCCCAGCCATCTGTTAATGGATGTAAAAATCATGTTGAAAAGATTGAATTAGATGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGCTGATGGCAATATTCAGTTTGGAGTGCTGGCAACAGAAAGAGATAATCATCCTCAGCTATTATCTTCTCCTAGTAGCCTCAAAAGTGGAAACTTACTAGAAGGTCAAATGGTTTCATGCACTTATCATAACTCCATAGATTTGACATGCATTCTTGAAAGTGTGGAGAATGAGCTTCATTTCTCTTCAAAGGTGTCTTTAGCTGATTATATTCGAACTTTTGTTGAAAAGGAAGTGAACAAATTAATTCCTTCTCAAGAAGACGGAAAATTGAGTGAGGTTGCAGTTAATGACCCTGGTTTCCCAAAGATACTTACTAGTAAAACATCTGTGAAGGAAATTCTAAATTGCAAATCTGAGGATCCCGTAAAAGATGGTTATTCATTGTGTGTGTCTGCATCTGGAAATCATATGTCTAATGTGTTCTCGAAAGCATTTAAAGAATTGTGCGGGTATTTAGATGAGGTGGTTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTTGACAAGAAATCTCAAAAAATTTTCCCAAACCACAATTCGAAATTTCGACCTTCAAGGTTACGTGAAAGAAATCCTAAGATTGCAGAATATGTTGCAACTGCACTGTGCCGACAGAAGCTTCATGATGAAGTTCTAAAAGAGTGGAAGTCGTCGTACCTTGATTCTGCATTTAATGAAGTTTTAAAATCATCATATACCATAAAGAAACGTTTTCAGTCTTATGGTCATAAGAAAGGGAAAACATTCAGTGCAAACAAGGAACAACTGAATGTTGCTACTTCTGGACTCAGAAGTGTGAAGGAAGGAGCAAAAAGTTCGTCTGGAGCTCCTCTGGCGATTGGAAAGTATACATATCACCGCAAGAAGCTGTCACGTAAAGAGTTGTGTTCCTCTCAATCTGTGAAAGAAGATGATTCAGGGCCAGGGAAACAGCCTGTGGCTAAGTTAAGGAAACCTGTTTCTGGGGGTGTGAATGAGTCTGCAGAAGATAAAATAACTGCTGTTAAACGTGGAAAGACTACGGTGATTAAAGAGAAGAAGGGTACATCTGCTAAGGGCAGGCCTTCTCCTGTCATTGTCAATAATAGCTCACTCAGTGATCAATTATCCTTGAAGAATAAAACTAGTCGGAAAGTTTTGAAGAGTATAGTTCAAAATGATGATATGGATGTTGTAAAGTCTAATGAAAAAAGGCTTTCAGCGTCAACAAATAATAGTGTTGGCTTGAAGAAGGTGGTTAGAAGTGATGTCTGTGATAGCGTCTTTCAAGGGAAGAGCACTGGTCAATGCTCCAAAGAGATACTAAACGCAACAAAAAAAGTATCAAAATCAAAAAGGAAGCATCAGACAGATGGTATAACATCCACACATCCTGCAAAGGTTTTGAAAATTTCAAGTAATGGTGCCAGTCTGGGAGCTAGCAAACAGGCTACTGTGGCAAGGAGGAAATCTGCTAAATCCAAGCCATTGAATTTATGTCCTAGATCAGATGGAAGTGCTAGGACTTCTATTGATGGTTGGGAATGGCATAAATGGTCTCAAAGTGCCAGTCCTGCATATAGAGCACGTGTCAGGGGTGTTTCATCTGTACAAAACAAGCACATAGATTCTGAAAATAATTTATCTCAGTTGTCGAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAATCTTCTTGCTGCTGCGGAGGGTGCAGATCTTCTTAAAGTGCCTCAGTTGAAGGCAAGGAAAAAGCGATTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCAGAGGACTTTGTCATTGAATATATTGGAGAACTAATTCGTCCTCGGATATCTGATATACGTGAGCGTCAATATGAGAAAATGGGAATTGGAAGCAGTTACCTATTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGGTTGCAAGATTTATTAACCATTCTTGTGAGCCTAACTGTTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTTATATATGCAAAACGGCATATAGCCGCTGGTGAAGAAATCACATACAATTATAAGTTCCCCTTGGAAGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTGGATCACTAAATTAG 3687 0.3982 MVFSTASLHDDGPFISRKRLRVSDLGHQDIGLHADAGICSDISLFSQPNVERSIGDISSCSNIDDKLDPDSGMEMSYPSNVNSGDVPVSTTGNISHLDQSFSGYVQQPTFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLSMSIAGTRMPTNCSSSSCKDMAVYGQDRSFEHAALLAVNPVSQSVSQSHINYHIKESNHINSNSEAFNSIIPFQMLGEECCWLYEDEKGMKHGPHSISELISWHRHGYLGDKTVISHSENKYGTFVLLSAVNALKGEGSGTICEISENVSSQLHMGIMKAARRVVLDGIIGDIIAEFVAEKKHKRRKIETADQTSETCMLDNKMSTSSLEMSKGTAIPSETASSHILDDKACHEISRPSSTNFKSVGSIENFWWSYAVVRKVLSDYCLEVMWNAVFFDTVSEFLFSWRRRKLWSHPKPQPSVNGCKNHVEKIELDALVLRPGSSVCNADGNIQFGVLATERDNHPQLLSSPSSLKSGNLLEGQMVSCTYHNSIDLTCILESVENELHFSSKVSLADYIRTFVEKEVNKLIPSQEDGKLSEVAVNDPGFPKILTSKTSVKEILNCKSEDPVKDGYSLCVSASGNHMSNVFSKAFKELCGYLDEVVDEEEIGDLPPGFDKKSQKIFPNHNSKFRPSRLRERNPKIAEYVATALCRQKLHDEVLKEWKSSYLDSAFNEVLKSSYTIKKRFQSYGHKKGKTFSANKEQLNVATSGLRSVKEGAKSSSGAPLAIGKYTYHRKKLSRKELCSSQSVKEDDSGPGKQPVAKLRKPVSGGVNESAEDKITAVKRGKTTVIKEKKGTSAKGRPSPVIVNNSSLSDQLSLKNKTSRKVLKSIVQNDDMDVVKSNEKRLSASTNNSVGLKKVVRSDVCDSVFQGKSTGQCSKEILNATKKVSKSKRKHQTDGITSTHPAKVLKISSNGASLGASKQATVARRKSAKSKPLNLCPRSDGSARTSIDGWEWHKWSQSASPAYRARVRGVSSVQNKHIDSENNLSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGVARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSKKCRGSLN. 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04085 1228 SUPERFAMILY SET domain 1085 1225 IPR046341 -
Seca5g04085 1228 CDD SET_SETD1 1077 1224 IPR037841 GO:0042800|GO:0048188
Seca5g04085 1228 ProSiteProfiles SET domain profile. 1089 1206 IPR001214 GO:0005515
Seca5g04085 1228 SUPERFAMILY GYF domain 251 309 IPR035445 -
Seca5g04085 1228 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 68 1228 IPR044570 GO:0042800|GO:0051568
Seca5g04085 1228 Gene3D SET domain 1043 1228 IPR046341 -
Seca5g04085 1228 SMART PostSET_3 1212 1228 IPR003616 -
Seca5g04085 1228 Pfam SET domain 1101 1205 IPR001214 GO:0005515
Seca5g04085 1228 MobiDBLite consensus disorder prediction 979 1004 - -
Seca5g04085 1228 ProSiteProfiles GYF domain profile. 257 307 IPR003169 GO:0005515
Seca5g04085 1228 SMART set_7 1089 1212 IPR001214 GO:0005515
Seca5g04085 1228 Gene3D - 249 329 IPR035445 -
Seca5g04085 1228 MobiDBLite consensus disorder prediction 801 835 - -
Seca5g04085 1228 ProSiteProfiles Post-SET domain profile. 1212 1228 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04085 Seca-Chr5 98347336 98362372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04085 1088 1228 C2H2 Transcription Factor Family AT2G23740 36.810 5.90e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g04085 SET 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04085 - - gmx:100805708 1781.92