Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04084 ATGATTTCTAGCACCTTCCAAAGCCAGCAGGGTGGTGGTGCTACTGCAAGCAGAATTAGAGGAACCTCCCATTATGATGGGAAGAAAAATCATCATTGCTGCTCCTCCTATTGGGGGTATTCAACATCATTGGAGCTTTATGACAACCCATGGAAGATCAAGAAAGCATTGACAGCGAGCGATCTTGGGAAGCTGAATAGGCTCTTGTTTGGTTCTGATATGCTGGAGAAGCTGATGGTCCCTGTGTTGGGTGAGGATGCTCAGAGAGATGCTGAGACTGGAATGGGAACCCCTGTTAGGGTTTGGGATGTCGACACCATGTCCATGCATCACCTTATTCTTAAGCGTTGGGCTTCTTTCAGAAACTATGTCTTGATTGGGAAATGGAACAGAGACTTTGTGAAGAGAAGGGCACTCAAAGAAGGAGATGAAATTGGACTTCACTGGGATTCTTATAAACGATGCTTCAACTTCTCTGTTCTCAAACGAGCGATCCAACAACTCACTAATTAA 513 0.4503 MISSTFQSQQGGGATASRIRGTSHYDGKKNHHCCSSYWGYSTSLELYDNPWKIKKALTASDLGKLNRLLFGSDMLEKLMVPVLGEDAQRDAETGMGTPVRVWDVDTMSMHHLILKRWASFRNYVLIGKWNRDFVKRRALKEGDEIGLHWDSYKRCFNFSVLKRAIQQLTN. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04084 170 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g04084 170 MobiDBLite consensus disorder prediction 1 17 - -
Seca5g04084 170 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 29 163 - -
Seca5g04084 170 CDD B3_DNA 51 162 IPR003340 GO:0003677
Seca5g04084 170 Gene3D - 50 167 IPR015300 -
Seca5g04084 170 SUPERFAMILY DNA-binding pseudobarrel domain 49 161 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04084 Seca-Chr5 98326801 98327313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04084 53 148 RAV Transcription Factor Family AT1G51120 34.314 6.77e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04084 - - lja:Lj6g3v1382150.1 226.483