Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04082 ATGTCACAGGTGAGAAGGTATGTTTACCACGATGTGGTTCGATTGGATGATCTAGAAAAGCTTATTGATTGTTCCAACATTCAGCCCTACACTATTAACAGTGCCAAAGTGATATTCTTAAATCAGAGGCCTCAATCAAGGTCATGCAAAGGTACCGCCAATGCTTGCTTCACTTGTGACAGGATTCTTCAGGAGCCATTTCATTTCTGCTCTCTCTCATGCAAGGTTGATTACATGGTGTACGAGGGTCAAAGCTTGTCCAGCATTTTACATCGATTTGATGAATCTGACTTTGCAATTTCGCAGTTCGAGGGACTAAGGGTGGATAGCTCAGAGGTAATTGATGAAGATACCCAAATTGCCCCCAGTTCCTCTTATTCCAACACTGAGGCCACCAGCAATTCGGTAATTTCGCACGAACCCCACAACATGACGAAGAAGGGCAAGTCCAATAGGTTCCTCCCTGGGATCGTCCTCTCTCTTGGCAGCAGAAGAAAGGGTGCTCCTCATAGGGCTCCTCTCTCCTAG 528 0.4583 MSQVRRYVYHDVVRLDDLEKLIDCSNIQPYTINSAKVIFLNQRPQSRSCKGTANACFTCDRILQEPFHFCSLSCKVDYMVYEGQSLSSILHRFDESDFAISQFEGLRVDSSEVIDEDTQIAPSSSYSNTEATSNSVISHEPHNMTKKGKSNRFLPGIVLSLGSRRKGAPHRAPLS. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04082 175 Pfam PLATZ transcription factor 5 76 IPR006734 -
Seca5g04082 175 MobiDBLite consensus disorder prediction 121 149 - -
Seca5g04082 175 MobiDBLite consensus disorder prediction 121 141 - -
Seca5g04082 175 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04082 Seca-Chr5 98278734 98281021 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca5g04082 PLATZ 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04082 - - ccaj:109804478 328.946