Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04081 ATGGCGACAGCGTCGGTGGTGCCGGCTAACCGGCGTCGAGCTGCGAACGCCGCGGAGGAGTTGGACTTCGAGACGACGGAGGGTGTGAAGGCGATTGGAAGCTTCGAGGAGATGGGGATAAAGGACGACCTTCTCCGAGGAATCTACCAGTACGGCTTCGAGAAACCCTCCGCGATCCAACAACGTGCCGTTACGCCTATTATCCAGGGACGTGACGTCATCGCTCAAGCACAATCTGGAACCGGAAAAACCTCCATGATCGCCCTCACCGTCTGTCAAGTCGTCGACACCTCCGTCAGAGAGGTGCAGGCCTTAATCTTGTCACCAACGAGGGAACTGGCCTCACAGACTGAAAAGGTTATATTGGCTATTGGGGATTTCATAAATATACAAGCACATGCTTGCATTGGTGGTAAAAGTGTGGGAGAAGATATAAGGAAACTCGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTCTGTGACATGATTAAAAGAAGAACATTGCGCACAAGAGCTATCAAGATGCTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCTCCAGACCTTCAGGTTGTCTTGATTTCTGCTACACTTCCTCATGAAATACTGGAGATGACAAATAAGTTCATGACGGAACCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTTGTCGCAGTCGAAAGGGAGGAATGGAAGTTTGATACTCTTTGTGATCTATATGATACTCTCACAATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTTACTGTCTCATCAATGCATGGCGACATGCCTCAAAAAGAAAGAGATGCAATTATGTCAGAATTTCGTGCGGGAACAACCCGGATATTGGTCTTAATTTTGTGCCCTGGTATTGTGTGTTATGTCTTTGGCATGCTAAACATAGGCTATAATAGCAATGAGTTATTGTTGATATTGATCATGCATTTGCTTTCTGTTATCAGGTTTCTCTCGTTATCAATTATGACCTTCCAAATAACCGTGAGCTGTACATTCATCGGATTGGCCGTTCTGGACGTTTTGGACGAAAGTTGGCCTAATAATGGTTTGCAGGGTGTTGCAATAAATTTTGTCAAGAGCGATGATATCAAGATCTTGAGAGATATTGAGCAATATTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATTTAA 1314 0.4361 MATASVVPANRRRAANAAEELDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTEPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMSEFRAGTTRILVLILCPGIVCYVFGMLNIGYNSNELLLILIMHLLSVIRFLSLSIMTFQITVSCTFIGLAVLDVLDESWPNNGLQGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04081 437 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Seca5g04081 437 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Seca5g04081 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 327 IPR027417 -
Seca5g04081 437 Pfam Helicase conserved C-terminal domain 259 327 IPR001650 -
Seca5g04081 437 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Seca5g04081 437 CDD SF2_C_DEAD 246 327 - -
Seca5g04081 437 SMART ultradead3 52 249 IPR014001 -
Seca5g04081 437 FunFam Eukaryotic initiation factor 4A-III 16 237 - -
Seca5g04081 437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Seca5g04081 437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 437 IPR001650 -
Seca5g04081 437 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 327 - -
Seca5g04081 437 Gene3D - 18 237 IPR027417 -
Seca5g04081 437 Gene3D - 238 330 IPR027417 -
Seca5g04081 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04081 Seca-Chr5 98269387 98273210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04081 19 437 Eukaryotic Initiation Factors Gene Family AT3G19760 74.408 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04081 K13025 - gmx:100795032 665.611