Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04077 ATGGAAGAGGCACGTAATAAGGGAGATAGAGATATCGATGAGAAAGAAGGAGGAGAAGAAGTGAAGTACCGTGGTGTGAGGAAGAGACCATGGGGTAAGTTTGGGGCTGAAATTAGAGACCCTACAAAGCCTACGGGAAGGCAATGGTTAGGAACATTTGACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCTGCCATTGCATTAAGGGGTGCTCTTGCTATCCTTAATTTTCCTGATGAGTTTCATTCTCATCTCCCTTTTGTCTCATCATCCTCATCTTCTACCACTGTCATTGGAAGTTCTTCTAATTCTGCTGCACAACAACAGAGGGAAGTTATTGAGTTTGAGTATTTGGACAGTAAGGTGTTGGAAGACCTTCTTGACTCAACTGTACAAGAGAAGAAGGAAAACTAG 420 0.4333 MEEARNKGDRDIDEKEGGEEVKYRGVRKRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIALRGALAILNFPDEFHSHLPFVSSSSSSTTVIGSSSNSAAQQQREVIEFEYLDSKVLEDLLDSTVQEKKEN. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04077 139 SUPERFAMILY DNA-binding domain 22 82 IPR016177 GO:0003677
Seca5g04077 139 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Seca5g04077 139 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Seca5g04077 139 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Seca5g04077 139 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Seca5g04077 139 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g04077 139 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Seca5g04077 139 PANTHER DNA-BINDING DOMAIN 15 133 IPR044808 GO:0003700|GO:0009873
Seca5g04077 139 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Seca5g04077 139 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Seca5g04077 139 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04077 Seca-Chr5 98237583 98238002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04077 19 131 AP2-EREBP Transcription Factor Family AT3G23230 61.345 1.74e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g04077 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04077 - - gmx:100807295 181.03