Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04076 ATGGAGAAGGATAAAGAGAATTCGAAGAGAGGGGGAAAAGTGAAGTACGTTGGGGTGAGGAAGAGGCCATGGGGAAAATATGGGGCAGAGATTAGAGACCCAAGAAAGCCAAAGGGAAGGTGGTGGTTAGGGACATTTGACACTGCAGAAGAAGCAGCAAGAGCTTATGATCGTGCTGCCATTGCTTTGAGAGGTGCTCTTGCTATCCTCAATTTTCCTGATGAGTTCCATTCTCATCTCCCTTTTGTATCTTCAAGTAGTTCTTCTTCTGCTGCTGCAGCACATGCACAACAAGAGATGCAAGTTATTGAGTTTGAGTACTTGGATAACAAAGTATTAGAAGACCTCCTTGACTTTGAACAAGAGATCGAAGAAATAGAAACTGATCGATGA 393 0.4351 MEKDKENSKRGGKVKYVGVRKRPWGKYGAEIRDPRKPKGRWWLGTFDTAEEAARAYDRAAIALRGALAILNFPDEFHSHLPFVSSSSSSSAAAAHAQQEMQVIEFEYLDNKVLEDLLDFEQEIEEIETDR. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04076 130 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Seca5g04076 130 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Seca5g04076 130 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Seca5g04076 130 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Seca5g04076 130 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Seca5g04076 130 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Seca5g04076 130 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Seca5g04076 130 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Seca5g04076 130 PANTHER DNA-BINDING DOMAIN 7 118 IPR044808 GO:0003700|GO:0009873
Seca5g04076 130 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04076 Seca-Chr5 98222223 98222615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04076 13 121 AP2-EREBP Transcription Factor Family AT3G23230 56.667 1.12e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g04076 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04076 - - gmx:100807295 154.066