Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04075 ATGGAAGATGCACGTAAGGGGAAGCAAGACAAAGTGAAAGGAGGAGAAGAAGAAGAAGTGAAGTACCGTGGTGTGAGGAAGAGACCATGGGGGAAGTATGGGGCTGAAATTAGAGACCCAACAAAGCCTACGGGAAGGCATTGGTTAGGAACATTTGACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCTGCCATTGCATTAAGGGGTGCTCTTGCTATCCTTAATTTTCCTGATGAGTTTCATTCTCATCTCCCTTTTGTCTCATCATCCTCATCTTCTACCACTGTCATTGGAAGTTCTTCTAATTCTGCTGCACAACAACAGAGGGAAGTTATTGAGTTTGAGTGTTTGGATGACAAGGTGTTGGAAGACCTTCTTGACTCAACTGTACAAGAGATGAAAAGAATGGAAGACTAG 423 0.4397 MEDARKGKQDKVKGGEEEEVKYRGVRKRPWGKYGAEIRDPTKPTGRHWLGTFDTAEEAARAYDRAAIALRGALAILNFPDEFHSHLPFVSSSSSSTTVIGSSSNSAAQQQREVIEFECLDDKVLEDLLDSTVQEMKRMED. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04075 140 SUPERFAMILY DNA-binding domain 21 81 IPR016177 GO:0003677
Seca5g04075 140 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Seca5g04075 140 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g04075 140 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Seca5g04075 140 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Seca5g04075 140 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Seca5g04075 140 PANTHER DNA-BINDING DOMAIN 16 130 IPR044808 GO:0003700|GO:0009873
Seca5g04075 140 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Seca5g04075 140 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Seca5g04075 140 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Seca5g04075 140 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04075 Seca-Chr5 98204814 98205236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04075 16 137 AP2-EREBP Transcription Factor Family AT3G23230 58.594 3.11e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca5g04075 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04075 - - adu:107483754 171.785