Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04060 ATGCTTGGCAGTAGGAAGTGGGGTGGTAGCATTTCGCCGTTGACTTGCTGGATGGTCACAAGGGAAAGGCAGACTACACAAATAAGGGGATTGTATTTGAAAACTATATTAAGCCAAGATGTTGTTTTCTATGATAAGGAAACAAACACAGGAGAGGTGGTGGGGAGAATGTCAGGTGACATGGTTCTCATACAAGATGCCAATTGCCATGGGTTAAAAGTAAGAGCTCAATTTTAG 237 0.4262 MLGSRKWGGSISPLTCWMVTRERQTTQIRGLYLKTILSQDVVFYDKETNTGEVVGRMSGDMVLIQDANCHGLKVRAQF. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04060 78 Gene3D ABC transporter type 1, transmembrane domain 9 73 IPR036640 GO:0005524|GO:0016020
Seca5g04060 78 SUPERFAMILY ABC transporter transmembrane region 15 68 IPR036640 GO:0005524|GO:0016020
Seca5g04060 78 PANTHER ABC TRANSPORTER B FAMILY 10 72 IPR039421 -
Seca5g04060 78 Pfam ABC transporter transmembrane region 15 67 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04060 Seca-Chr5 98028079 98030586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04060 1 67 Calmodulin-binding Proteins AT2G36910 41.791 5.11e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04060 K05658 - gmx:100799760 96.6709