Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04044 ATGAAATATATTCGGAGCAACAGCTTGAAGAGGCTCTTCTCGTTTGGAAGACGCAGTTTTGGGGGAGAAAATGATGAGAACCTGGTGGTTACTCCTCCTGAAGAACACCCTCCAAGACCCTTTTGGAAATGCTTCTCTTATGAAGAGTTGTTTCATGCCACCAATGGCTTCAGCTCAGGAAATTTGGTTGGGAAAGGAGGGTATGCAGAGGTTTACAAGGGAATACTGAATGGTGGTGAGGAAATTGCTGTGAAGAGGCTCACAAGAACTCCAAGGGATGAAAGGAAGGAGAAGGAGTTTCTAACAGAGATTGGTACAATTGGTCATGTGCGCCATTCCAATGTGTTGCCTCTTCGGGGGTGTTGTATTGACAATGGACTTTACCTAGTTTTTGAGCTATCCACCTTAGGCTCTGTTGCTTCTCTTATCCATGATGAGAAAAAGCCCCCTCTTGATTGGAAAACAAGGTACAAGATAGTTCTTGGGACAGCACGTGGCCTCCACTACTTGCACAAAGGTTGCCAGAGGAGGATCATTCACAGGGACATCAAGGCATCAAACATTCTGCTGACAGCAGATTTTGAGCCACAGATATCCGATTTTGGACTAGCAAAGTGGCTTCCATCTCAGTGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTATATGCACGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGAGTGTTCTTGCTAGAAGTCATCTCAGGGAAGAAACCCGTGGATGGGTCTCACCAAAGCTTGCACAGCTGGGCTAAGCCAATATTGAACAATGGGGAGATAGAAAAGTTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTACTAGACTTGCCTTTGCTGCCTCGCTGTGCATCAGGGCATCTTCAACTTGGCGACCCACCATGGACGAGGTATTAAATAAAGTAAACTTATGCATTGAGTGA 990 0.4576 MKYIRSNSLKRLFSFGRRSFGGENDENLVVTPPEEHPPRPFWKCFSYEELFHATNGFSSGNLVGKGGYAEVYKGILNGGEEIAVKRLTRTPRDERKEKEFLTEIGTIGHVRHSNVLPLRGCCIDNGLYLVFELSTLGSVASLIHDEKKPPLDWKTRYKIVLGTARGLHYLHKGCQRRIIHRDIKASNILLTADFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGKKPVDGSHQSLHSWAKPILNNGEIEKLVDPRLGGAYDVTQFTRLAFAASLCIRASSTWRPTMDEVLNKVNLCIE. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04044 329 Pfam Protein tyrosine and serine/threonine kinase 60 264 IPR001245 GO:0004672|GO:0006468
Seca5g04044 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Seca5g04044 329 PIRSF ILK 31 329 - -
Seca5g04044 329 FunFam Putative receptor-like serine/threonine-protein kinase 25 133 - -
Seca5g04044 329 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Seca5g04044 329 FunFam Putative receptor-like serine/threonine-protein kinase 135 327 - -
Seca5g04044 329 SMART serkin_6 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04044 329 Gene3D Transferase(Phosphotransferase) domain 1 135 329 - -
Seca5g04044 329 SUPERFAMILY Protein kinase-like (PK-like) 34 323 IPR011009 -
Seca5g04044 329 PANTHER OS08G0249100 PROTEIN 35 322 IPR046958 -
Seca5g04044 329 ProSiteProfiles Protein kinase domain profile. 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04044 329 Gene3D Phosphorylase Kinase; domain 1 34 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04044 Seca-Chr5 97719991 97723660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04044 45 320 Trihelix Transcription Factor Family AT1G68690 45.263 1.45e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca5g04044 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04044 - - gmx:100801765 595.119