LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04043	ATGGTTGCAATGTCCTCTTTAACGAGCATGGCTCCGCAAAAGGCCATTATTGCTGAGACTGGAGAACGTGTTGATGTCAGTGATGTTAAGATCAACACCATCCTTGCTGTCAAGGCTGGTGATACTATTCCTCTTGATGGAGTAGTCGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTCCCTGTAACCAAAGAATTAGATTCATTAGTCTGGGCTGGAACTATTAACCTGAATGGATATATAAGTGTAAAAACTACCGTGTTGGCAAAAGACACGGTGGTGGCAAGAATGTCAAAACTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGGGCACAAAGATTCATAGATAAATTTTCAAAGTACTATATTCCTGTGGTTGTCTTCATTTCAGCTAGCATTGCTGTGGTACCAGCTGCATTAGGAGTTCCTGATTTTGACCCTTGGTTTCATCTGGCAATTGTGGTTTTATTGAGTGGATGCCCTTGTGCTCTCATCCTCTCAACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGTTTACTACTGAAAGGTGGAGATTATCTTGAAACGCTTTCTGGAATTAAAACAGTGGCTTTTGATAAAACAGGCACAATAACAAGAGGAGAGTTCACTGTATCAGACTTTAGTGCTGCAGATGACATTAGCATTGAAACCTTATTGTACTGGGTTTCAAGTATTGAGAGTAAATCAAGTCATCCAATGGCAGCCGCACTAGTGGAATATGGAATGTTGCACTCTATAAAACCAGTCCCTGAAAATGTAGAGAATTTTCAAAATTTTCCAGGGGAAGGAATTTCTGGCACAACTGATGGGAGGGATATCTATATAGGCAATAGAAGAATTGCTGTCAGAGCTGGCTGTGAAAGTGTCGATTGCCATGTGCAAGTTGAAAGCCATGAGATTTCTACCCAGAAGCAATACTGTGAACCAACTCTAGTTGGAGTCTTCAGCCTAGTTGATAGTTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAAGTTATTAGGCGTCAGATCAGCCATGCTGACAGGAGATAGCCCTCAGGTTGCTATGTATGTTCAGAGTCAGTTGAACCATGCTCTGGACATTGTTCATGCAGAGCTTCTACCTCATGAAAAGGCAATGATTATTGAGAATTTCAAAAAAGATGGGCTAACAGCCATGTTTGGAGATGGCATTAATGATGCTCCCGCATTAGCTGCAGCTGACATTGGCATCTCAATGGGAATATCAGGTTCAGCACTTGCTAATGAGACAGGCAATGCCATTCTCATGTCAAATGACATCAGAAAAATACCTGAAGCCATTAGGCTGGCAAGAAAAACTATTAGAAAGCTCATTGAGAATGTCATTATTTCAATTGGCTCCAAGAGTGCCATACTGGCATTGGCAATTGCAGGATATCCTTTAGTTTGGCTTGCTGTGCTAACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGCTAATTTTGCAAGAGAAACCAAAATATGAAAGAAAATCTACAAGGTCTAAATACGGAAACTTCTTGGAAGAAGATAAGACGGTGACTCTACTTGACAAGCAAAGTAATGGTGATGAGAACCAAGGGCTTCTTAGTGCTGAAAAGTGTGGTAAGGAGTGCTGTAAAAATGTCACTCATCATGTGGCAACCACAAAAGCAAGCAGCCATGAATCTTCTGGACTTTCAAAGTTGAGCTTACTCAAGGAAAATGACCAAGGGAACTTGATCTTTGTGGAAGTTTATATGGTGAAACCTTGCAATGATTTCTGTTTAGACAAAGTCAAGATGTGTGAGGACTCTTCATGCATAACAAAGAATAGCTCTGATCGTTGTGGCACTGGTTCTGTTATGAAACAAGGTGCCAGCATTGTTACCTCGGAATCTACTGGTTATAAGGACAAATCTATGGATGTTTCAGAGTTGTCTGGGACAAGTGGGATTCCCCAGTGCTGCAAGAATGGATGCTGTAACGATAGTGTTAATGATATCAGTAGCCTTAGCCAACCAGACATTATTATTGAGTGA	2088	0.4104	MVAMSSLTSMAPQKAIIAETGERVDVSDVKINTILAVKAGDTIPLDGVVVEGKCEVDEKMLTGESFPVTKELDSLVWAGTINLNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRAQRFIDKFSKYYIPVVVFISASIAVVPAALGVPDFDPWFHLAIVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSGIKTVAFDKTGTITRGEFTVSDFSAADDISIETLLYWVSSIESKSSHPMAAALVEYGMLHSIKPVPENVENFQNFPGEGISGTTDGRDIYIGNRRIAVRAGCESVDCHVQVESHEISTQKQYCEPTLVGVFSLVDSCRSGALEAIEELKLLGVRSAMLTGDSPQVAMYVQSQLNHALDIVHAELLPHEKAMIIENFKKDGLTAMFGDGINDAPALAAADIGISMGISGSALANETGNAILMSNDIRKIPEAIRLARKTIRKLIENVIISIGSKSAILALAIAGYPLVWLAVLTDVGTCLLVILNSMLILQEKPKYERKSTRSKYGNFLEEDKTVTLLDKQSNGDENQGLLSAEKCGKECCKNVTHHVATTKASSHESSGLSKLSLLKENDQGNLIFVEVYMVKPCNDFCLDKVKMCEDSSCITKNSSDRCGTGSVMKQGASIVTSESTGYKDKSMDVSELSGTSGIPQCCKNGCCNDSVNDISSLSQPDIIIE.	696

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04043	695	FunFam	Putative cadmium/zinc-transporting ATPase 3	219	339	-	-
	Seca5g04043	695	ProSitePatterns	E1-E2 ATPases phosphorylation site.	210	216	IPR018303	-
	Seca5g04043	695	SUPERFAMILY	HAD-like	206	508	IPR036412	-
	Seca5g04043	695	PRINTS	H+-transporting ATPase (proton pump) signature	439	464	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca5g04043	695	PRINTS	H+-transporting ATPase (proton pump) signature	407	423	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Seca5g04043	695	PANTHER	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	3	514	-	-
	Seca5g04043	695	SUPERFAMILY	Calcium ATPase, transmembrane domain M	108	202	IPR023298	-
	Seca5g04043	695	ProSitePatterns	Hypothetical cof family signature 2.	407	429	-	-
	Seca5g04043	695	Pfam	haloacid dehalogenase-like hydrolase	204	421	-	-
	Seca5g04043	695	SFLD	Haloacid Dehalogenase	191	460	-	-

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04043	Seca-Chr5	97708508	97713689	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04043	4	581	Primary Pumps ATPases	AT4G30110	61.224	0.0	688

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04043	K01534		-	gmx:100815324	1082.4

Showing 1 to 1 of 1 entries