Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04040 ATGACTTTTCAATTTTCTCCTCCTTCCTTTGACACTTCATATGACAATTTTGATACACAGGCGCAAAAAACTTTTGACAGTTTTGGTGATAGGGTTGATTCCACCATGAAATGGGCAGTAGCAGAATCTGTAGTTTATGGAGTGGTGGTAATAATAGCAATTATAGCAATAGTGTATGCCATTATTGAGTGCTTGAAGAAGGCAGGAACAGTAATTCCTGCTTACACTCAACTTCCAACAACAGAGAAGGATCATAAAGCTTCAAACTCATTTCCTTCAACCAGCAAAATTGAAGTGGTAATACCACCAGATTCAAAAGCTGAGTTTCCAACCATGGAAAGATTCCTGAGCAACATTAATAGAGAGAAACCCATCAGATTCTCACCTGAGCAACTTGAAGGAATTACAAGCAACTACTCAACCATATTGGGTTCTGGTGCTTTTGGGGTTGTCTTCAAAGGAGAATTGTCAAATGGAGAGCATGTTGCAGTCAAAGTTCTCAGCTGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCAGAAGTTAGCACCATTGGAAGAACTTACCATATCAATCTAGTCAGACTTTATGGCTTCTGCTTCCACCATGACACAAGAGCTCTTGTTTATGAGTATGTGGAAAATGGGTCTTTGGACAAGTACTTGTTTGGAAGCCAGAACCAAGACATTGAGTTGGGGAAGCTTCATGAGATTGCAATTGGAACAGCTAAAGGAATTGCTTATTTACATGAGGAATGTCAACATAGAATAATTCATTATGATATCAAACCAGAGAATGTTCTTCTTGACATGAAATTAGAACCAAAGATAGCAGATTTTGGCCTAGCAAAGCTTCGCAGCAGAGAAAGTAACACTGTGGTCAATACACACTTTAGAGGAACCAGGGGATATGCTGCACCAGAAATGTGGAAGGCTTATCCAGTGACTTACAAATGTGATGTGTATAGTTTTGGTATTCTTTTATTTGAAATTGTAGGGAGGAGGAGGCATTTTGATTCTAGCTACAGTGAGCCACAGCAATGGTTTCCAAAATGGACATGGGAGATGTTTGAGAATAATGAAATACCTGTAATGCTTGCACTTTGTGGAATGCAAGAGAAAGACAATGAGAAAGCTGAGAGAATGGTAAAGGTGGCTTTATGGTGTGTTCAGTATTCACCAAAAGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATAGAAATTTCTCCACCTCCATTTCCCTTCCAAAATTTGGTGACTGGGAAACCAAACTTAACTCCACATGGAAGCACTGCAGATTCAGATACTACTCCATCATCATGGCAGACAGAATCTGAACGAGAATCTGGTTCAAGAACCAAGCACAACACATTTCAGATTGAAAAACCTACTTAA 1410 0.3936 MTFQFSPPSFDTSYDNFDTQAQKTFDSFGDRVDSTMKWAVAESVVYGVVVIIAIIAIVYAIIECLKKAGTVIPAYTQLPTTEKDHKASNSFPSTSKIEVVIPPDSKAEFPTMERFLSNINREKPIRFSPEQLEGITSNYSTILGSGAFGVVFKGELSNGEHVAVKVLSCLDMGMEEQFKAEVSTIGRTYHINLVRLYGFCFHHDTRALVYEYVENGSLDKYLFGSQNQDIELGKLHEIAIGTAKGIAYLHEECQHRIIHYDIKPENVLLDMKLEPKIADFGLAKLRSRESNTVVNTHFRGTRGYAAPEMWKAYPVTYKCDVYSFGILLFEIVGRRRHFDSSYSEPQQWFPKWTWEMFENNEIPVMLALCGMQEKDNEKAERMVKVALWCVQYSPKDRPLMSTVVKMLEGEIEISPPPFPFQNLVTGKPNLTPHGSTADSDTTPSSWQTESERESGSRTKHNTFQIEKPT. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04040 469 MobiDBLite consensus disorder prediction 452 469 - -
Seca5g04040 469 ProSiteProfiles Protein kinase domain profile. 137 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04040 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca5g04040 469 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 418 - -
Seca5g04040 469 MobiDBLite consensus disorder prediction 424 451 - -
Seca5g04040 469 SMART serkin_6 137 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04040 469 Gene3D Phosphorylase Kinase; domain 1 112 212 - -
Seca5g04040 469 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Seca5g04040 469 MobiDBLite consensus disorder prediction 422 469 - -
Seca5g04040 469 SUPERFAMILY Protein kinase-like (PK-like) 117 408 IPR011009 -
Seca5g04040 469 FunFam Putative receptor-like protein kinase 213 415 - -
Seca5g04040 469 Pfam Protein kinase domain 141 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04040 469 Gene3D Transferase(Phosphotransferase) domain 1 213 414 - -
Seca5g04040 469 FunFam serine/threonine-protein kinase PBS1-like 108 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04040 Seca-Chr5 97696177 97698182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04040 126 457 Receptor kinase-like Gene Family AT5G38280 39.003 4.93e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca5g04040 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04040 - - aprc:113852543 738.028