Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04039 ATGTCAAGTATGGACGGAGTAGGAAATACCTTAGCCATCACATTTGCTGTGTTGCTGTGGTTGATGATTATGTTGGTTTTTGCTTGCTATAGAAGATCTCAGAGTGATACCACTTTAGACTCACAAATTCTGACCCTCACTGTGGATCAATTTCTGAACGATATAGAAAGAGAGAAGCCAATCAGGTTTAACAGTGAGCAGCTAAGGATTGCAACTGATAACTACTCCAACTTGTTGGGTTCAGGAGGTTTTGGAGAAGTTTATAAAGGAAATTTTAGTGATGAAACCATTGTAGCTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAAAATTCAGCAGCAGTTTATGGCAGAAGTTGGTACAATTGGTAGGACTCATCATTTCAATCTTGTTCGGCTCTATGGATTTTGCTATGAAAGAAACTTTATGGCACTGGTTTATGAATACATGGTGAATGGCTCTCTTGATAGGTATCTATTTCAGGAAAACAAGACCTTAGGATATGGAAAACTTCATGAGATTGCTGTTGGGACAGCAAGAGGCATTGCTTACTTGCATGAAGAGTGCCTACAAAGAATAATCCACTATGACATTAAACCAGGAAATATTCTCTTGGACAGGAATTTCAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAATAGGGAAAATACTCACATAACCATGACTGGGGGAAGGGGGACCCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGCTTTGGTATGCTGTTATTTGAAATCATAGGCAGGAGAAAAAACCTTGACTTAAAACTTTATGAAAGCCAGGAGTGGTTTCCAATCTGGGTTTGGAAAAAATTTGATGCTGGACAATTGGGGGAGTTAATATCAGTCTGTGGGATAGAAGAGAAAAATAAGGAGATAGCAGAAAGAATGGTTAAGGTAGCTCTGTGTTGTGTTCAGTATAGGCCAGAATCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTGCAGTAGAAATTCCAAAGCCTTTGAACCCATTTCAGCATTTTATGGATGGGACTTTGGCTGCTGATCCAACCCAAGTGTCACAGACCTATACAACAAGTATTTCTTCTGGCTCTACAGCTATTGTAAGTGCTACTCCTATTATGAACAAGTATGAGATTGAATTAGGCTCTAGCAATGGATGA 1218 0.3982 MSSMDGVGNTLAITFAVLLWLMIMLVFACYRRSQSDTTLDSQILTLTVDQFLNDIEREKPIRFNSEQLRIATDNYSNLLGSGGFGEVYKGNFSDETIVAVKVLRGSSDKKIQQQFMAEVGTIGRTHHFNLVRLYGFCYERNFMALVYEYMVNGSLDRYLFQENKTLGYGKLHEIAVGTARGIAYLHEECLQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRKNLDLKLYESQEWFPIWVWKKFDAGQLGELISVCGIEEKNKEIAERMVKVALCCVQYRPESRPIMSVVVKMLEGAVEIPKPLNPFQHFMDGTLAADPTQVSQTYTTSISSGSTAIVSATPIMNKYEIELGSSNG. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04039 405 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Seca5g04039 405 PANTHER OS07G0415500 PROTEIN 9 356 - -
Seca5g04039 405 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Seca5g04039 405 Pfam Protein tyrosine and serine/threonine kinase 77 343 IPR001245 GO:0004672|GO:0006468
Seca5g04039 405 SUPERFAMILY Protein kinase-like (PK-like) 63 373 IPR011009 -
Seca5g04039 405 FunFam serine/threonine-protein kinase PBS1-like 46 149 - -
Seca5g04039 405 FunFam Putative receptor-like protein kinase 150 351 - -
Seca5g04039 405 SMART serkin_6 73 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04039 405 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04039 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Seca5g04039 405 Gene3D Transferase(Phosphotransferase) domain 1 150 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04039 Seca-Chr5 97691973 97694528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04039 62 356 Receptor kinase-like Gene Family AT5G38280 42.763 1.26e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Seca5g04039 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04039 - - gmx:100803355 620.928